Scaffold Ga0074072_1000018

Overview

Basic Information

• Taxon OID: 3300005260
• Scaffold ID: Ga0074072_1000018
• Source Dataset Name: Microbial communities on the surface of kaolinite enhanced biochar from soil with fertiliser in Sydney, Australia
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 97659
• Total Scaffold Genes: 97
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 74 (76.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Microbial Communities On The Surface Of Biochar

Source Dataset Sampling Location

• Location Name: Sydney
• Coordinates
  • Lat. (^o): -33.917926
  • Long. (^o): 151.235347

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012812	Metagenome / Metatranscriptome	277	Y
F047142	Metagenome	150	Y
F065129	Metagenome	128	Y
F090863	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074072_100001821	F012812	GGAG	MTTTPRLLLDTSIAQLQTLASFLAEEMGEYRQMAVVASPEARACKEILMTISVLIPKLQAARYVVGDDARLGRCVECEDG*
Ga0074072_100001853	F047142	GGA	LFRRPLRGTPALLALGVSVVLQVCAPVAQATAITKPTIQRTALGGFVKDRALARLLGETLFRDTVEVMSDPANQNQAAAQSPVTGADNSAVAQVARNVLAHQRLDKYLWLIQQAYDDSMWKGGDRARIELHFPLIWRTSIMLYEASLGASPHRVRVCTPADNGDGFDCRDEISRARIVPIPAQAPLIQQHQPAIG*
Ga0074072_100001862	F090863	AGCAGG	MDDTTMQLGLLMEAAQTHQKAAESTLRKLKSSTTDLATQVREEVRAVLTEQLQSLASDSNRAAAALRQVQRAASVRALVWSLGITTLCSAIPIFLACWLLPSRSEIATLRAKHDELATKIASLEERGGRIDLRHCGNGARLCVRVDRKAPIYGEQSDYLVIRGY*
Ga0074072_100001876	F065129	AGGAGG	MPTTSTSGTFEECADELNDFINTLDRYPHTVLAFVLRAHLAGLLQALLINDLWAREDLVTFMDDMKREALNPDEHS*