Scaffold Ga0066685_10001367

Overview

Basic Information

• Taxon OID: 3300005180
• Scaffold ID: Ga0066685_10001367
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10481
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017074	Metagenome	243	Y
F022623	Metagenome / Metatranscriptome	213	Y
F056166	Metagenome / Metatranscriptome	138	Y
F085415	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066685_100013671	F085415	AGGAG	MMRVTVYMGWQIESRSYKADSDRWWPRALVSIFEGGRFRTHDVRALLTVTFDTARDADDYAVRMAKKWIED
Ga0066685_100013673	F022623	GAG	MLMGLAKGVTVGVIAIILTLDASVQEFAELVALSDDARRERFHLSAACTPIVSAVKAAEPNSSRLTVFVRCSPWTTLPSSPIEPSSWRDK*
Ga0066685_100013675	F056166	GGAGG	MMNRTQRTIGLSAFVMLAVLGTGWALEKASGRSHTQGATSVSGPARPRGAVTTPLWREPVDAQPAGTDSSPEYDRSDLALSQG*
Ga0066685_100013677	F017074	AGGA	MAIGRSPYNRWVLEIALTIVGGLILLVLTYFVGVRRGKRYREEDRVAAAEHDADHRIDRVVQRYVLLVRTNQTGALHGLLVAGVKNLRSSDEIRLARERATAQTGNDPLREYSLDGGVNLKEFVEACDFDNVSLKNDRDLLARYGKRRDA*