Metagenome / Metatranscriptome Family F085415

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F085415
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	74 residues
Representative Sequence	MSVTEHKGWQIESRSYKSDGNRWCPRAWVSVCEGGRLYTHDMLALLSVTFGAARDADDYAVRMAKAWIEDRDS
Number of Associated Samples	90
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	88.18 %
% of genes near scaffold ends (potentially truncated)	37.84 %
% of genes from short scaffolds (< 2000 bps)	72.97 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.78

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (94.595 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (22.523 % of family members)
Environment Ontology (ENVO)	Unclassified (36.937 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (42.342 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 19.80% β-sheet: 31.68% Coil/Unstructured: 48.51%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.78
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.78
Powered by PDBe Molstar

SCOP family	SCOP domain	Representative PDB	TM-score
d.50.1.1: Double-stranded RNA-binding domain (dsRBD)	d1whna1	1whn	0.63774
e.3.1.0: automated matches	d6i1ha1	6i1h	0.63426
e.3.1.1: beta-Lactamase/D-ala carboxypeptidase	d1vqqa3	1vqq	0.63334
e.3.1.0: automated matches	d4ztka_	4ztk	0.63092
d.204.1.0: automated matches	d4fyla1	4fyl	0.63035

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF02633	Creatininase	6.31
PF08241	Methyltransf_11	5.41
PF13432	TPR_16	4.50
PF00072	Response_reg	3.60
PF08352	oligo_HPY	2.70
PF07274	DUF1440	1.80
PF03241	HpaB	1.80
PF08450	SGL	1.80
PF04392	ABC_sub_bind	1.80
PF00106	adh_short	1.80
PF13365	Trypsin_2	0.90
PF01663	Phosphodiest	0.90
PF03928	HbpS-like	0.90
PF08734	GYD	0.90
PF13505	OMP_b-brl	0.90
PF11697	DUF3293	0.90
PF02518	HATPase_c	0.90
PF07719	TPR_2	0.90
PF04909	Amidohydro_2	0.90
PF00144	Beta-lactamase	0.90
PF00528	BPD_transp_1	0.90
PF01694	Rhomboid	0.90
PF13385	Laminin_G_3	0.90
PF09844	DUF2071	0.90
PF02538	Hydantoinase_B	0.90
PF01734	Patatin	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG1402	Creatinine amidohydrolase/Fe(II)-dependent FAPy formamide hydrolase (riboflavin and F420 biosynthesis)	Coenzyme transport and metabolism [H]	6.31
COG0146	N-methylhydantoinase B/oxoprolinase/acetone carboxylase, alpha subunit	Amino acid transport and metabolism [E]	1.80
COG2368	Aromatic ring hydroxylase	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.80
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.80
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	1.80
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	1.80
COG3477	Uncharacterized membrane protein YagU, involved in acid resistance, DUF1440 family	Function unknown [S]	1.80
COG0705	Membrane-associated serine protease, rhomboid family	Posttranslational modification, protein turnover, chaperones [O]	0.90
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.90
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.90
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	0.90
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.90
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	0.90
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.90
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.59 %
Unclassified	root	N/A	5.41 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.59 %
Unclassified	root	N/A	5.41 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.59 %
Unclassified	root	N/A	5.41 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	55.86 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	8.11 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	6.31 %
Unclassified	root	N/A	5.41 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	55.86 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6.31 %
Unclassified	root	N/A	5.41 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.80 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	55.86 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6.31 %
Unclassified	root	N/A	5.41 %
Rhodocyclales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	1.80 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	54.05 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	6.31 %
Unclassified	root	N/A	5.41 %
Rhodocyclaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae	0.90 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	54.05 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	6.31 %
Unclassified	root	N/A	5.41 %
Rugosibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Rugosibacter	0.90 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	54.05 %
Saccharopolyspora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora	6.31 %
Unclassified	root	N/A	5.41 %
Rugosibacter aromaticivorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Rugosibacter → Rugosibacter aromaticivorans	0.90 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	54.05 %
Saccharopolyspora spinosa	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora → Saccharopolyspora spinosa	6.31 %
Unclassified	root	N/A	5.41 %
Rugosibacter aromaticivorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Rugosibacter → Rugosibacter aromaticivorans	0.90 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664022\|INPgaii200_c1169416	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1300	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101801537	All Organisms → cellular organisms → Bacteria	1852	Open in IMG/M
3300002558\|JGI25385J37094_10076398	Not Available	1052	Open in IMG/M
3300002908\|JGI25382J43887_10418301	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	567	Open in IMG/M
3300002908\|JGI25382J43887_10448822	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	546	Open in IMG/M
3300005167\|Ga0066672_10062964	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2169	Open in IMG/M
3300005172\|Ga0066683_10494703	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	747	Open in IMG/M
3300005175\|Ga0066673_10273908	All Organisms → cellular organisms → Bacteria	981	Open in IMG/M
3300005180\|Ga0066685_10001367	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	10481	Open in IMG/M
3300005180\|Ga0066685_10021057	All Organisms → cellular organisms → Bacteria → Proteobacteria	3906	Open in IMG/M
3300005180\|Ga0066685_10022734	All Organisms → cellular organisms → Bacteria	3785	Open in IMG/M
3300005180\|Ga0066685_10224186	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1293	Open in IMG/M
3300005186\|Ga0066676_10610241	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	740	Open in IMG/M
3300005338\|Ga0068868_101688877	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	596	Open in IMG/M
3300005445\|Ga0070708_100056669	All Organisms → cellular organisms → Bacteria	3487	Open in IMG/M
3300005447\|Ga0066689_10488936	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	775	Open in IMG/M
3300005467\|Ga0070706_101386833	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora → Saccharopolyspora spinosa	643	Open in IMG/M
3300005518\|Ga0070699_100049165	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3650	Open in IMG/M
3300005518\|Ga0070699_101021335	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	758	Open in IMG/M
3300005536\|Ga0070697_100359949	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1258	Open in IMG/M
3300005540\|Ga0066697_10254123	All Organisms → cellular organisms → Bacteria	1041	Open in IMG/M
3300005554\|Ga0066661_10597441	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	655	Open in IMG/M
3300005555\|Ga0066692_10254295	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1109	Open in IMG/M
3300005556\|Ga0066707_10000440	All Organisms → cellular organisms → Bacteria → Proteobacteria	13054	Open in IMG/M
3300005569\|Ga0066705_10256240	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora → Saccharopolyspora spinosa	1109	Open in IMG/M
3300005586\|Ga0066691_10006470	All Organisms → cellular organisms → Bacteria	5197	Open in IMG/M
3300006046\|Ga0066652_101132385	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	741	Open in IMG/M
3300006797\|Ga0066659_11082937	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	670	Open in IMG/M
3300006871\|Ga0075434_100859503	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	922	Open in IMG/M
3300006903\|Ga0075426_10879317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora → Saccharopolyspora spinosa	675	Open in IMG/M
3300006904\|Ga0075424_100126538	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2701	Open in IMG/M
3300006914\|Ga0075436_100310144	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora → Saccharopolyspora spinosa	1132	Open in IMG/M
3300007076\|Ga0075435_100450494	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora → Saccharopolyspora spinosa	1110	Open in IMG/M
3300007076\|Ga0075435_100616602	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	941	Open in IMG/M
3300007265\|Ga0099794_10009695	All Organisms → cellular organisms → Bacteria → Proteobacteria	4063	Open in IMG/M
3300009012\|Ga0066710_103645242	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	580	Open in IMG/M
3300009038\|Ga0099829_10022440	All Organisms → cellular organisms → Bacteria → Proteobacteria	4356	Open in IMG/M
3300009137\|Ga0066709_100186266	All Organisms → cellular organisms → Bacteria	2708	Open in IMG/M
3300009819\|Ga0105087_1020164	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	956	Open in IMG/M
3300010304\|Ga0134088_10018659	All Organisms → cellular organisms → Bacteria	3051	Open in IMG/M
3300010401\|Ga0134121_12043995	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	606	Open in IMG/M
3300011270\|Ga0137391_10510017	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1017	Open in IMG/M
3300012198\|Ga0137364_11267135	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300012203\|Ga0137399_10084334	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2421	Open in IMG/M
3300012203\|Ga0137399_10225984	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1528	Open in IMG/M
3300012203\|Ga0137399_10519172	All Organisms → cellular organisms → Bacteria	1000	Open in IMG/M
3300012206\|Ga0137380_10049547	All Organisms → cellular organisms → Bacteria → Proteobacteria	3850	Open in IMG/M
3300012206\|Ga0137380_11669732	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	521	Open in IMG/M
3300012208\|Ga0137376_10386265	All Organisms → cellular organisms → Bacteria	1216	Open in IMG/M
3300012349\|Ga0137387_10423887	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	965	Open in IMG/M
3300012351\|Ga0137386_10110362	Not Available	1951	Open in IMG/M
3300012355\|Ga0137369_10115038	All Organisms → cellular organisms → Bacteria	2185	Open in IMG/M
3300012360\|Ga0137375_10582584	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	935	Open in IMG/M
3300012362\|Ga0137361_10594860	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1014	Open in IMG/M
3300012685\|Ga0137397_11103006	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	578	Open in IMG/M
3300012685\|Ga0137397_11225586	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	539	Open in IMG/M
3300012918\|Ga0137396_10093684	All Organisms → cellular organisms → Bacteria	2134	Open in IMG/M
3300012922\|Ga0137394_10478450	All Organisms → cellular organisms → Bacteria	1059	Open in IMG/M
3300012925\|Ga0137419_10365509	Not Available	1120	Open in IMG/M
3300014154\|Ga0134075_10401068	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	606	Open in IMG/M
3300015374\|Ga0132255_104658647	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	581	Open in IMG/M
3300016445\|Ga0182038_10870052	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	793	Open in IMG/M
3300017656\|Ga0134112_10031915	All Organisms → cellular organisms → Bacteria	1858	Open in IMG/M
3300017656\|Ga0134112_10457918	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	535	Open in IMG/M
3300017659\|Ga0134083_10293071	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	689	Open in IMG/M
3300017659\|Ga0134083_10356179	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	631	Open in IMG/M
3300018028\|Ga0184608_10376548	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	620	Open in IMG/M
3300018052\|Ga0184638_1014446	Not Available	2722	Open in IMG/M
3300018054\|Ga0184621_10054474	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1344	Open in IMG/M
3300018431\|Ga0066655_10044636	All Organisms → cellular organisms → Bacteria	2250	Open in IMG/M
3300018431\|Ga0066655_10486367	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	816	Open in IMG/M
3300018433\|Ga0066667_10001983	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	7979	Open in IMG/M
3300018468\|Ga0066662_10149206	All Organisms → cellular organisms → Bacteria	1765	Open in IMG/M
3300018468\|Ga0066662_11501889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora → Saccharopolyspora spinosa	701	Open in IMG/M
3300018468\|Ga0066662_12341704	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	561	Open in IMG/M
3300022195\|Ga0222625_1338069	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	566	Open in IMG/M
3300025910\|Ga0207684_10026891	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	4906	Open in IMG/M
3300025922\|Ga0207646_10322325	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora → Saccharopolyspora spinosa	1396	Open in IMG/M
3300026297\|Ga0209237_1163485	All Organisms → cellular organisms → Bacteria	826	Open in IMG/M
3300026309\|Ga0209055_1001025	All Organisms → cellular organisms → Bacteria	18768	Open in IMG/M
3300026315\|Ga0209686_1020974	All Organisms → cellular organisms → Bacteria	2598	Open in IMG/M
3300026327\|Ga0209266_1268779	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300026329\|Ga0209375_1027734	All Organisms → cellular organisms → Bacteria	3111	Open in IMG/M
3300026333\|Ga0209158_1023766	All Organisms → cellular organisms → Bacteria → Proteobacteria	2729	Open in IMG/M
3300026334\|Ga0209377_1014653	All Organisms → cellular organisms → Bacteria	4206	Open in IMG/M
3300026528\|Ga0209378_1002913	All Organisms → cellular organisms → Bacteria	11675	Open in IMG/M
3300026540\|Ga0209376_1177916	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	991	Open in IMG/M
3300027379\|Ga0209842_1065166	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	646	Open in IMG/M
3300027577\|Ga0209874_1141995	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	546	Open in IMG/M
3300027846\|Ga0209180_10010434	All Organisms → cellular organisms → Bacteria	4788	Open in IMG/M
3300027846\|Ga0209180_10368225	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	818	Open in IMG/M
3300027950\|Ga0209885_1012471	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	883	Open in IMG/M
3300027952\|Ga0209889_1032644	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1131	Open in IMG/M
3300028536\|Ga0137415_10436564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Rugosibacter → Rugosibacter aromaticivorans	1115	Open in IMG/M
3300028536\|Ga0137415_10747066	All Organisms → cellular organisms → Bacteria	789	Open in IMG/M
3300031170\|Ga0307498_10076797	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	976	Open in IMG/M
3300031545\|Ga0318541_10157939	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1247	Open in IMG/M
3300031572\|Ga0318515_10567484	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	604	Open in IMG/M
3300031720\|Ga0307469_10253869	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1417	Open in IMG/M
3300031720\|Ga0307469_10482719	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1081	Open in IMG/M
3300031720\|Ga0307469_10505798	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1060	Open in IMG/M
3300031740\|Ga0307468_100395068	Not Available	1053	Open in IMG/M
3300031781\|Ga0318547_10582778	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	693	Open in IMG/M
3300031820\|Ga0307473_10577059	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	772	Open in IMG/M
3300031859\|Ga0318527_10361803	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	618	Open in IMG/M
3300031981\|Ga0318531_10408949	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	614	Open in IMG/M
3300032174\|Ga0307470_10449881	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	926	Open in IMG/M
3300032180\|Ga0307471_100018786	All Organisms → cellular organisms → Bacteria	4986	Open in IMG/M
3300032180\|Ga0307471_100537811	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1321	Open in IMG/M
3300034354\|Ga0364943_0068667	All Organisms → cellular organisms → Bacteria → Proteobacteria	1198	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.79%
Host-Associated	Host-Associated	7.21%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.19%
Plants	Host-Associated → Plants	7.21%
Aquatic	Environmental → Aquatic	3.60%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	88.29%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.41%
Sediment	Environmental → Aquatic → Sediment	2.70%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.80%
Freshwater	Environmental → Aquatic → Freshwater	0.90%
Floodplain	Environmental → Terrestrial → Floodplain	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	75.68%
Loam	Environmental → Terrestrial → Soil → Loam	8.11%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.41%
Sand	Environmental → Terrestrial → Soil → Sand	4.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.70%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.90%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.90%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.90%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	33.33%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	13.51%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.41%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	4.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.70%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.80%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.90%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	22.52%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	21.62%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	10.81%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	8.11%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.31%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	5.41%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.50%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	4.50%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.70%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.80%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.90%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.90%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.90%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009819	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_40_50	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026315	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300027379	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20 (SPAdes)	Environmental	Open in IMG/M
3300027577	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027950	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_40_50 (SPAdes)	Environmental	Open in IMG/M
3300027952	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300034354	Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPgaii200_11694161	2228664022	Soil	MSTTVYLGWQIEPRSYRGESDAWWPRALVSVFEGRRLRTHDVRALLSVTFDAARDADDYAVRMAKKWIEDHARYPVLVH
INPhiseqgaiiFebDRAFT_1018015372	3300000364	Soil	MSTTVYLGWQIEPRSYRGESDAWWPRALVSVFEGRRLRTHDVRALLSVTFDAARDADDYAVRMAKKWIEDHARYPVLVH*
JGI25385J37094_100763982	3300002558	Grasslands Soil	MSVTEHKGWQIESRSYEADGNRWYPRALIGVFEGGRLYTHDVVALLNLTFDTALDADDYAIKMAKAWIEDRASALAR*
JGI25382J43887_104183011	3300002908	Grasslands Soil	MSVVQHNGWRIESQSFKARGNRWCPKALVGVCEGGRFYTHDVVALLSVTFETARDADDYAIKVAKMWIEDRA*
JGI25382J43887_104488221	3300002908	Grasslands Soil	MASTMSAIEHKGWQIESQSYEADGNRWFPRALVSRLAGGRLCTHDVRALLSVTFDTAQDADDYSVRMAKTWIEDIDF*
Ga0066672_100629642	3300005167	Soil	MASTMSAIEHKGWQIESRSYEADGNRWFPRALVSRLDGGRLGTHDVRALLSVTFDTAEDADDYAVRMAKTWIEDIDF*
Ga0066683_104947032	3300005172	Soil	MSVTEHKGWQIESRSYKSAGNRWCPRAWVSVCEGGRFYTHDMLALLSVTFGAARDADDYAVRMAKAWIEDRDS*
Ga0066673_102739081	3300005175	Soil	MSVVQHNGWRIESQSFKARGNRWCPKALVGVCEGGRFYTHDVVALLSVTFETARDADDYAIKV
Ga0066685_100013671	3300005180	Soil	MMRVTVYMGWQIESRSYKADSDRWWPRALVSIFEGGRFRTHDVRALLTVTFDTARDADDYAVRMAKKWIED
Ga0066685_100210572	3300005180	Soil	MSVVQHNGWRIESQSFKARGNRWCPKALVGVFEGGRFYTHDVVALLSVTFETARDADDYAIKVAKMWIEDRA*
Ga0066685_100227344	3300005180	Soil	MSATEHKGWLIESQSYESDSNRWCPRALVSVFDGGRAYTHTLLALLSVTFDAAPDADDYAVKMAKTWIEDRDSGGRAWLG*
Ga0066685_102241861	3300005180	Soil	MSVTEHKGWQIESRSYKSDGNRWCPRAWVSVCEGGRFYTHDMLALLSVTFGAARDADDYAVRMAKAWIEDRDS*
Ga0066676_106102411	3300005186	Soil	MASTMSAIEHRGWQIESRSYEADGNRWCPRALVSRLDGARLCTHDVRALLSVTFDTAQDADDYSVRMATTWIEDRDYRP
Ga0068868_1016888771	3300005338	Miscanthus Rhizosphere	MMIETEHRGWLIESRSYESNGNRWRPRALVSQLDNGRICTHDVRALLSLTFETAEAADEYAVRMAKAWIEDR
Ga0070708_1000566693	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MASTMSAIEHKGWQIESQSYEADGNRWFPRALVSRLAGARLCTHDVRALLSVTFDTAQDADDYSVRMAKTWIEDIDF*
Ga0066689_104889362	3300005447	Soil	MRRRMAMSVTEHKGWQIESRSYEADGNRWYPRALIGVFEGGRLYTHDVVALLNLTFDTALDADDYAIKMAKAWIEDRASALAR*
Ga0070706_1013868332	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MASTMSAIEHKGWLIELRSYEADGNRWFPRALVSRLDSGRLCTHDVRALLSVTFDTAQDADDYSVRLAKTWIEDIDF*
Ga0070699_1000491652	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MASTMSAIEHKGWQIESQSYEADGNRWFPRALVSRLAGARLCTHDVRALLSVTFDTAQDADDYSVRIAKTWIEDIDF*
Ga0070699_1010213351	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MSVTEHRGWQIESRSYKSDGNRWCPRAWVSVCEGGRFYTHDMLALLSVTFGAARDADDYAVRMAKAWIEDRDS
Ga0070697_1003599493	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MSVTEHRGWQIESRSYKSDGNRWCPRAWVSVSEGGRFYTHDMLALLSVTFGAARDADDYAVRMAKAWIEDRDS*
Ga0066697_102541232	3300005540	Soil	MSVVQHNGWRIESQSFKARGNRWCPKALVGVFEGGRFYTHDVVALLSVTFETARDADDYAIKVAKMWIED
Ga0066661_105974412	3300005554	Soil	MASTMSAIEHRGWQIESRSYEADGNRWCPRALVSRLDGARLCTHDVRALLSVTFDTAQDADDYSVRMATTWIEDRDYRPPGCSLSFA
Ga0066692_102542952	3300005555	Soil	MSVTEHKGWRIESRSYKSDGNRWWPRAWVSVCEGGRFYTHDMLALLSVTFGAARDADDYAVRMAKAWIEDRDS*
Ga0066707_100004408	3300005556	Soil	MSVTEHKGWQIESRSYEADGNRWYPRALIGVFEGGRLYTHDVVALLNLTFDTALDADDYAIKMAKAWIEDRTSALAR*
Ga0066705_102562401	3300005569	Soil	MASTMSAIEHKRWQIESRAYEADGNRWFPRALVSRLDGGRLGTHDVRALLSMTFDTAEDADDYAVRMAKTWIEDIDF*
Ga0066691_100064703	3300005586	Soil	MSVIQHNGWRIESQSFKARGNRWCPKALVGVFEGGRFYTHDVVALLSVTFETARDADDYAIKVAKMWIEDRA*
Ga0066652_1011323853	3300006046	Soil	MSVVQHNGWQIESQSFKARGNRWCPKALVGVFEGGRFYTHDVVALLSVTFETARDADDYAIKVAKMWIEDRA*
Ga0066659_110829372	3300006797	Soil	MSVVQHNGWRIESQSFKARGNRWCPKALVGVCEGGRFYTHDVVALLSVTFETARDADDYAIKVAKMWI
Ga0075434_1008595031	3300006871	Populus Rhizosphere	MSMTGHKGLQIESRSFQADGNRWCPRALVSVLEGGGFRTHDVRALLSVTFATARDADDYAAKMAKAWIEDR
Ga0075426_108793172	3300006903	Populus Rhizosphere	SAIEHKGWLIELRSYEADGNRWFPRALVSRLDSGRLCTHDVRALLSVTFDTAQDADDYSVRLAKTWIEDIDF*
Ga0075424_1001265381	3300006904	Populus Rhizosphere	MSMTGHKGLQIESRSFQADGNRWCPRALVSVLEGGGFRTHDVRALLSVTFATARDADDYAAKMAKAW
Ga0075436_1003101442	3300006914	Populus Rhizosphere	MASTMSAIEHKGWLIELRSYEADGNRWFPRALVSRLDSGRLCAHDVRALLSVTFDTAQDADDYSVRLAKTWIEDIDF*
Ga0075435_1004504941	3300007076	Populus Rhizosphere	IEHEGWQIELRSYEADGNRWFPRALVSRLDSGRLCAHDVRALLSVTFDTAQDADDYSVRLAKTWIEDIDF*
Ga0075435_1006166022	3300007076	Populus Rhizosphere	MSTTVYLGWQIEPRSYRGESDAWWPRALVSVFEGRRLRTHDVRGLLSVTFDAARDADDYAVRMAKKWIEDHARYPVLVH*
Ga0099794_100096954	3300007265	Vadose Zone Soil	MSVTEHKGGQIESRSYEAGGNRWYPRALVGVFDGGRLYTHDVVALLNLTFDTALDADDYAIKMAKAWIEDRAYALAR*
Ga0066710_1036452421	3300009012	Grasslands Soil	MASTMSAIEHRGWQIESRSYEADGNRWCPRALVSRLDGARLCTHDVRALLSVTFDTAQDADDYSVRMATTWIEDGDYRPPGCSLSC
Ga0099829_100224406	3300009038	Vadose Zone Soil	MSVTEHKGWQIESRSYKSDGNRWCPRASVSVCEGGRFYTHDMLALLSVTFGAARDADDYAVRMAKAWIEDRDS*
Ga0066709_1001862662	3300009137	Grasslands Soil	MRRRVAMSVTEHKGWQIESRSYEADGNRWYPRALIGVFEGGRLYTHDVVALLNLTFDTALDADDYAIKMAKAWIEDRASALAR*
Ga0105087_10201641	3300009819	Groundwater Sand	MSVTEHKGWQIESRSYKSDGNRWCPRVWVSVCEGGRFYTHDMLALLSVTFGAARDADDYAVRMAKAWIEDRDS*
Ga0134088_100186592	3300010304	Grasslands Soil	MSVVQHNGWRIESQSFKARGNRWCPKALVGVFEGGRFYTHDVVALLSVTFETARDADDYAIKVAKMWI*
Ga0134121_120439951	3300010401	Terrestrial Soil	VVTTIAVSEHKGWHIESRSYEAGGRRWCPRALVSVLDGGRFCTHDVRALLSVTFETPQDADDYAVRMAKVWIE
Ga0137391_105100173	3300011270	Vadose Zone Soil	MSVTEHKGWQIESRSYKSDGNRWCPRVWVSVCEGGRFYAHVMMAWLSVAFGAARDADDYAVRMAKAWIEDRDS*
Ga0137364_112671351	3300012198	Vadose Zone Soil	WRIESQSFKARGNRWCPKALVGVFEDGRFYTHDVVALLSVTFETARDADDYAIKVAKMWIEDRA*
Ga0137399_100843345	3300012203	Vadose Zone Soil	MASTMSAIEHKGWQIESRSYEADGNRWCPRALVSRLDDGRLGTHDVRALLSVTFDTAYDADDYAVKMAK
Ga0137399_102259843	3300012203	Vadose Zone Soil	MSVVEHKGWQIESQSFKAGRDRWCPKALVGVFEGGRLYTHDVVALLSVTFETARDADEYAIKVAKTWIEDRA*
Ga0137399_105191722	3300012203	Vadose Zone Soil	MSVTEHKGWQIESRSYEADGNRWYPRALVGVFDGGRLYTHDVVALLNLTFDTALDADDYAIKMAKAWIEDRAYALAR*
Ga0137380_100495473	3300012206	Vadose Zone Soil	MSATEHKGWLIESQSYESDSNRWYPRALVSVFDGGRAYTHTLLALLSVTFDAAPDADDYAVKMAKTWIEDRDSGGRAWLG*
Ga0137380_116697321	3300012206	Vadose Zone Soil	MSVTEHKGWQIESRSYEADGNRWYPRALVGVFEGGRLYTHDVVALLNLTFDTALDADDYAINMAKAWIEDRAYALAR*
Ga0137376_103862653	3300012208	Vadose Zone Soil	MSVVQHNGWRIESQSFKARGNRWCPKALVGVFEDGRFYTHDVVALLSVTFETARDADDYAIKVAKMWIEDRA*
Ga0137387_104238872	3300012349	Vadose Zone Soil	MSVTEHKGWQIESRSYEADGNRWYPRALVGVFEGGRLYTHDVVALLNLTFDTALDADDYAINMAKAWIEDRA*
Ga0137386_101103624	3300012351	Vadose Zone Soil	MSATEHKGWLIESQSYESDSNRWYPRALVSVFDGGRAYTHTLLALLSVTFDAAPDADDYAVKMAK
Ga0137369_101150381	3300012355	Vadose Zone Soil	YMSVTEHKGWQIESRSYKSDGNRWCPRAWVSVCEGGRFYTHDMLALLSVTFGAARDADDYAVRMAKAWIEDRDS*
Ga0137375_105825841	3300012360	Vadose Zone Soil	SVTEHKGWQIESRSYKSDGNRWCPRAWVSVCEGGRFYTHDMLALLSVTFGAARDADDYAVRMAKAWIEDRDS*
Ga0137361_105948601	3300012362	Vadose Zone Soil	MAMSVTEHKGWQIESRSYEADGNRWYPRALIGVFEGGRLYTHDVVALLNLTFDTALDADNDGLTNLQE
Ga0137397_111030061	3300012685	Vadose Zone Soil	MTLHMGWQIEWRSYRGDFDRWCPRALVSIFEGGRFCTHDVRALLTVTFDTVRDADDYAVRMAKKWIE
Ga0137397_112255861	3300012685	Vadose Zone Soil	MRVTEHKGWQIESRSYEADGNRWYPRALVGVFDGGRLYTHDVVALLNLTFDTALDADDYAIKMAKA
Ga0137396_100936842	3300012918	Vadose Zone Soil	MRVTEHKGWQIESRSYEADGNRWYPRALVGVFDGGRLYTHDVVALLNLTFDTALDADDYAIKMAKAWIEDRAYAMAR*
Ga0137394_104784501	3300012922	Vadose Zone Soil	MRVTEHKGWQIESRSYEADGNRWYPRALVGVFDGGRLYTHDVVALLNLTFDTALDADDYAIKMAKAWIEDRAYALAR*
Ga0137419_103655093	3300012925	Vadose Zone Soil	MRATKHKGWLIESQSYESDGNRWCPRALVSVFDGGRAYTHTLLALLSVTFDAARDADDYAVKMAKTWI
Ga0134075_104010682	3300014154	Grasslands Soil	MSVVQHNGWRIESQSFKARGNRWCPKALVGVFEGGRFYTHDVVALLSVTFETARDADDY
Ga0132255_1046586471	3300015374	Arabidopsis Rhizosphere	VSEHRGWHIESRSYEAGGRRWCPRALVSVFDGGRFCTHDVRALLSVTFETAQDADDYAIRMAKVWIEEREYRPLRPGAVITGFARP
Ga0182038_108700521	3300016445	Soil	MRVTEHKGWQIESRSYELEGRRWCPRALVSLFEGGRFCTHDVRALLSVTFDTPTDADDYAARMAKAWIEER
Ga0134112_100319152	3300017656	Grasslands Soil	MSVVQHNGWRIESQSFKARGNRWCPKALVGVFEDGRFYTHDVVALLSVTFETARDADDYAIKVAKMWIEDRA
Ga0134112_104579182	3300017656	Grasslands Soil	GVAYMSVTEHKGWQIESRSYKSEGNRWCPRAWVSVCEGGRFYTHDMRALLSVTFGAARDADDYAVRMAKAWIEDRDS
Ga0134083_102930711	3300017659	Grasslands Soil	MSVTEHKGWQIESRSYKSDGNRWCPRAWVSVCEGGRFYTHDMRALLSVTFGAARDADDYAVRMAKAWIEDR
Ga0134083_103561792	3300017659	Grasslands Soil	MRATKHKGWLIESQSYESDGNRWCPRALVSDFDGGRAYTHTLLALLSVTFDAARDADDYAVKMAKTWIEDDIR
Ga0184608_103765482	3300018028	Groundwater Sediment	MSVTEHKGWQIESRSYKSDGNRWCPRVWVSVCEGGRFYTHDMLALLSVTFGAARDADDYAVRMAKAWIEDRDFLTPNDVASAFRR
Ga0184638_10144464	3300018052	Groundwater Sediment	MSVTEHKGWQIESRSYKSDGNRWCPRAWVSVCEGGRFYTHDMLALLSVTFGAARDADDYAVRMAKAWIEDRDS
Ga0184621_100544742	3300018054	Groundwater Sediment	MSVTEHKGWQIESRSYKSDGNRWCPRVWVSVCEGGRFYTHDMLALLSVTFGAARDADDYAVRMAKAWIEDRDS
Ga0066655_100446364	3300018431	Grasslands Soil	MSVVQHNGWRIESQSFKARGNRWCPKALVGVFEGGRFYTHDVVALLSVTFETARDADDYAIKVAKMWIEDRA
Ga0066655_104863671	3300018431	Grasslands Soil	MMSVTVHMGWQIESRSYKADGNRWWPRALVSVFEEGRLGTHDVRALLSVTFDTVREADDFAIKMAKTWIQDRY
Ga0066667_100019832	3300018433	Grasslands Soil	MSVVQHNGWRIESQSFKARGNRWCPKALVGVCEGGRFYTHDVVALLSVTFETARDADDYAIKVAKMWIEDRA
Ga0066662_101492064	3300018468	Grasslands Soil	MSVTEHKGWQIESRSYEADGNRWYPRALIGVFEGGRLYTHDVVALLNLTFDTALDADDYAIKMAKAWIEDRASALAR
Ga0066662_115018891	3300018468	Grasslands Soil	MASTMSAIEHKGWQIESRSYEADGNRWFPRALVSRLDGGRLGSHDVRALLSVTFDTAEDADDYAVRMAKTWIEDIDF
Ga0066662_123417042	3300018468	Grasslands Soil	MSVTEHRGWQIESRSYKSDGNRWCPRAWVSVSEGGRFYTHDMLALLSVTFGAARDADDYAVRMAKAWIEDRDS
Ga0222625_13380691	3300022195	Groundwater Sediment	MSVTEHKGWQIESRSYESDGNRWCPRVWVSVCEGGRFYTHDMLALLSVTFGAARDADDYAVRMAKAWIEDRDFLTPNDVASAFRR
Ga0207684_100268911	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MASTMSAIEHMGWLIELRSYEADGNRWFPRALVSRLDSGRLCTHDVRALLSVTFDTAQDADDYSVRLAKTWIEDIDF
Ga0207646_103223251	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MASTMSAIEHMGWLIELRSYEADGNRWFPRALVSRLDSRRLCTHDVRALLSVTFDTAQDADDYSVRLAKTWIEDIDF
Ga0209237_11634852	3300026297	Grasslands Soil	MASTMSAIEHKGWLIELRSYEADGNRWFPRALVSRLDSGRLCTHDVRALLSVTFDTAQDADDYSVRLAKTWIEDIDF
Ga0209055_100102511	3300026309	Soil	MASTMSAIEHKGWQIESRSYEADGNRWFPRALVSRLDGGRLGTHDVRALLSVTFDTAEDADDYAVRMAKTWIEDIDF
Ga0209686_10209742	3300026315	Soil	MASTMSAIEHKGWQIESRSYEADGNRWFPRALVSRLDGGRLGTHDVRALLSVTFDADDYAVRMAKTWIEDIDF
Ga0209266_12687792	3300026327	Soil	QHNGWRIESQSFKARGNRWCPKALVGVCEGGRFYTHDVVALLSVTFETARDADDYAIKVAKMWIEDRA
Ga0209375_10277343	3300026329	Soil	MSATEHKGWLIESQSYESDSNRWCPRALVSVFDGGRAYTHTLLALLSVTFDAAPDADDYAVKMAKTWIEDRDSGGRAWLG
Ga0209158_10237663	3300026333	Soil	MSVIQHNGWRIESQSFKARGNRWCPKALVGVFEGGRFYTHDVVALLSVTFETARDADDYAIKVAKMWIEDRA
Ga0209377_10146531	3300026334	Soil	MSVTEHKGWQIESRSYEADGDRWYPRALIGVFEGGRLYTHDVVALLNLTFDTALDADDYAIKMAKAWIEDRASALAR
Ga0209378_10029135	3300026528	Soil	MSVTEHKGWQIESRSYEADGNRWYPRALIGVFEGGRLYTHDVVALLNLTFDTALDADDYAIKMAKAWIEDRTSALAR
Ga0209376_11779162	3300026540	Soil	QIESRSYKSDGNRWCPRAWVSVCEGGRFYTHDMLALLSVTFGAARDADDYAVRMAKAWIEDRDS
Ga0209842_10651661	3300027379	Groundwater Sand	MSVTEHKGWQIESRSYKSDGNRWCPRVWVSVCEGGRLYTHDMLALLSVTFGAARDADDYAVRMAKAWIEDRD
Ga0209874_11419951	3300027577	Groundwater Sand	MSVTEHKGWQIESRSYKSDGNRWCPRAWVSVCEGGRLYTHDMLALLSVTFGAARDADDYAVRMAKAWIEDRDS
Ga0209180_100104347	3300027846	Vadose Zone Soil	MSVTEHKGWQIESRSYKSDGNRWCPRASVSVCEGGRFYTHDMLALLSVTFGAARDADDYAVRMAKAWIEDRDS
Ga0209180_103682252	3300027846	Vadose Zone Soil	MSVTQHKGWQIESRSYKSDGNRWCPRVWVSVCEGGRFYTHDMLALLSVTFGAARDADDYAFRMAKAWIEDRDS
Ga0209885_10124712	3300027950	Groundwater Sand	MSVTEHQGWQIESRSYKSDGNRWCPRVWVSVCEGGRLYTHDMLALLSVTFGAARDADDYAVRMAKAWIEDRDS
Ga0209889_10326442	3300027952	Groundwater Sand	MSVTEHKGWQIESRSYKSDGNRWCPRVWVSVCEGGRLYTHDMLALLSVTFGAARDADDYAVRMAKAWIEDRDS
Ga0137415_104365643	3300028536	Vadose Zone Soil	MSVVEHKGWQIESQSFKAGRDRWCPKALVGVFEGGRLYTHDVVALLSVTFETARDADEYAIKVAKTWIEDRA
Ga0137415_107470661	3300028536	Vadose Zone Soil	TEHKGWQIESRSYEADGNRWYPRALVGVFDGGRLYTHDVVALLNLTFDTALDADDYAIKMAKAWIEDRAYALAR
Ga0307498_100767972	3300031170	Soil	MNATKHNGWLIESQSYESDGNRWCPRALVSVFDGGRAYTHTLLALLSITFDGARDADDYAVKMAKTWIEERDSRGWT
Ga0318541_101579391	3300031545	Soil	MGWQIEPRSYEADSDCWWPRALVSIFEGRRLCTHDVRALLSVTFDTAHEANEYAIRMAKRWIEDRYYRPLGSPVSV
Ga0318515_105674842	3300031572	Soil	MRVTEHRGWQIESRSYELDGRRWCPRALVSVFEGGRFCTHDVRALLSVTFDTPKDADDYAVRMAKAWIEEREYRPLRPGAIITACA
Ga0307469_102538692	3300031720	Hardwood Forest Soil	MSATEHKGWLIESQSYESDGNRWCPKALVSVFEGGRPYTHTLLALLSVTFDAARDADDYAVKMAKTWIEDRDS
Ga0307469_104827192	3300031720	Hardwood Forest Soil	MNATKHKGWLIESQSYESDGKRWCPRALVSVFDGGRAYTHTLLALLSVTFDAAPDADDYAVRMAKTWIEERDSRRWAN
Ga0307469_105057982	3300031720	Hardwood Forest Soil	MSTTVYLGWQIEPRSYRGESDRWWPRALVSVFEGRRLRTHDVRALLSVTFDAARDADDYAVRMAKKWIEDHARY
Ga0307468_1003950682	3300031740	Hardwood Forest Soil	MNATKHKGWLIESQSYESDGKRWCPRALVSVFDGGRAYTHTLLALLSVTFDAARDADDYAVKMAKTWIEDRDA
Ga0318547_105827781	3300031781	Soil	MRVTEHKGWQIESRSYELEGRRWCPRALVSLFEGGRFCTHDVRALLSVTFDTPTDADDYAVRMAKAWIEEREYR
Ga0307473_105770591	3300031820	Hardwood Forest Soil	MSTTVYLGWQIEPRSYRGESDRWWPRALVSVFEGRRLRTHDVRALLSVTFDAARDADDYAVRMAKKWIEDHARYPVLVH
Ga0318527_103618032	3300031859	Soil	MRVTEHKGWQIESRSYELEGRRWCPRALVSLFEGGRFCTHDVRALLSVTFDTPTDADDYAVRMAKAWIEEREYRPLRPGAVITA
Ga0318531_104089491	3300031981	Soil	MRVTEHKGWQIESRSYELEGRRWCPRALVSLFEGGRFCTHDVRALLSVTFDTPQDADDYAVRMAKAWIEEREYRPLRPGTVITACAT
Ga0307470_104498811	3300032174	Hardwood Forest Soil	MSMTGHNGWQIESRSFQADGNRWCPRALVSVFEGGGFRTHDVRALLSVTFATARDADDYAAKMAKAWIEDRDYRPLGCAPSDQ
Ga0307471_1000187863	3300032180	Hardwood Forest Soil	MSVTEHKGWQIESRSYKSDGNRWCPRAWVSVCEGGRVYTHDMLALLSVTFGAARDADDYAVRMAKAWIEDRDS
Ga0307471_1005378113	3300032180	Hardwood Forest Soil	MSATKHKGWLIESQSYESDGKRWCPRALVSVFDGGRAYTHTLLALLSVTFDAAPDADDYAVRMAKTWIEERDSRRWAN
Ga0307471_1021173842	3300032180	Hardwood Forest Soil	MASTMSAIEHRGWQIESRSYEADGNRWCPRALVSRLDGARLCTHDVRALLSVTFDTAQDADDYS
Ga0364943_0068667_24_260	3300034354	Sediment	MNATKHKGWLIESQSYESDGNRWCPRALVSVFDGGRAYTHTLLALLSVTFDAAPDADDYAVRMAKTWIEERDSRGWAN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F085415

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences