Metagenome / Metatranscriptome Family F056166

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F056166
Family Type	Metagenome / Metatranscriptome
Number of Sequences	138
Average Sequence Length	80 residues
Representative Sequence	MVNRTRRTIGLSAFVMLVVLGTGWALEKASSNSHRQSGAAVNEPAKASDAVTTPLSREPMDVQPAATDSSPEYDRSDLLLSQG
Number of Associated Samples	105
Number of Associated Scaffolds	138

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	86.96 %
% of genes near scaffold ends (potentially truncated)	21.01 %
% of genes from short scaffolds (< 2000 bps)	77.54 %
Associated GOLD sequencing projects	97
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.23

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (91.304 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (20.290 % of family members)
Environment Ontology (ENVO)	Unclassified (34.058 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (44.928 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 21.62% β-sheet: 0.00% Coil/Unstructured: 78.38%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.23
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.23
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 138 Family Scaffolds
PF00106	adh_short	5.07
PF13602	ADH_zinc_N_2	4.35
PF08240	ADH_N	3.62
PF00578	AhpC-TSA	2.90
PF00076	RRM_1	2.90
PF01878	EVE	2.90
PF09992	NAGPA	2.17
PF00561	Abhydrolase_1	2.17
PF12697	Abhydrolase_6	1.45
PF02515	CoA_transf_3	1.45
PF00574	CLP_protease	1.45
PF00107	ADH_zinc_N	1.45
PF13185	GAF_2	0.72
PF03466	LysR_substrate	0.72
PF03928	HbpS-like	0.72
PF07690	MFS_1	0.72
PF06037	DUF922	0.72
PF08241	Methyltransf_11	0.72
PF12911	OppC_N	0.72
PF02518	HATPase_c	0.72
PF01590	GAF	0.72
PF00528	BPD_transp_1	0.72
PF01169	UPF0016	0.72
PF02872	5_nucleotid_C	0.72
PF00211	Guanylate_cyc	0.72
PF07978	NIPSNAP	0.72
PF00903	Glyoxalase	0.72
PF00989	PAS	0.72

COG ID	Name	Functional Category	% Frequency in 138 Family Scaffolds
COG0616	Periplasmic serine protease, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	2.90
COG0740	ATP-dependent protease ClpP, protease subunit	Posttranslational modification, protein turnover, chaperones [O]	2.90
COG1673	Predicted RNA-binding protein, contains PUA-like EVE domain	General function prediction only [R]	2.90
COG2947	Predicted RNA-binding protein, contains EVE domain	General function prediction only [R]	2.90
COG1030	Membrane-bound serine protease NfeD, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	1.45
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	1.45
COG0737	2',3'-cyclic-nucleotide 2'-phosphodiesterase/5'- or 3'-nucleotidase, 5'-nucleotidase family	Defense mechanisms [V]	0.72
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.72
COG2119	Putative Ca2+/H+ antiporter, TMEM165/GDT1 family	General function prediction only [R]	0.72
COG5661	Predicted secreted Zn-dependent protease	Posttranslational modification, protein turnover, chaperones [O]	0.72
COG5664	Predicted secreted Zn-dependent protease	Posttranslational modification, protein turnover, chaperones [O]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	91.30 %
Unclassified	root	N/A	8.70 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	91.30 %
Unclassified	root	N/A	8.70 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	91.30 %
Unclassified	root	N/A	8.70 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	57.25 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	14.49 %
Unclassified	root	N/A	8.70 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.72 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	57.25 %
Unclassified	root	N/A	8.70 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5.07 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.72 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	57.25 %
Unclassified	root	N/A	8.70 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.17 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.72 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	8.70 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	5.80 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.72 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.72 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	8.70 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	5.80 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.72 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.72 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	8.70 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	5.80 %
Bradyrhizobium neotropicale	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium neotropicale	0.72 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.72 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.72 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664022\|INPgaii200_c0941753	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	525	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101668359	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1181	Open in IMG/M
3300000443\|F12B_11253155	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	674	Open in IMG/M
3300000550\|F24TB_11312291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1352	Open in IMG/M
3300000559\|F14TC_104285024	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1321	Open in IMG/M
3300000559\|F14TC_104913248	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	821	Open in IMG/M
3300001431\|F14TB_101230613	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	634	Open in IMG/M
3300002908\|JGI25382J43887_10080584	All Organisms → cellular organisms → Bacteria	1750	Open in IMG/M
3300005167\|Ga0066672_10190125	All Organisms → cellular organisms → Bacteria	1305	Open in IMG/M
3300005167\|Ga0066672_10743325	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	624	Open in IMG/M
3300005174\|Ga0066680_10038123	All Organisms → cellular organisms → Bacteria	2764	Open in IMG/M
3300005180\|Ga0066685_10000394	All Organisms → cellular organisms → Bacteria → Proteobacteria	14784	Open in IMG/M
3300005180\|Ga0066685_10001367	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	10481	Open in IMG/M
3300005186\|Ga0066676_10690614	Not Available	695	Open in IMG/M
3300005406\|Ga0070703_10252807	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	716	Open in IMG/M
3300005438\|Ga0070701_10827962	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	633	Open in IMG/M
3300005445\|Ga0070708_100094736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium neotropicale	2724	Open in IMG/M
3300005445\|Ga0070708_100102595	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2621	Open in IMG/M
3300005447\|Ga0066689_10028331	All Organisms → cellular organisms → Bacteria	2826	Open in IMG/M
3300005467\|Ga0070706_100928525	Not Available	803	Open in IMG/M
3300005518\|Ga0070699_100622812	All Organisms → cellular organisms → Bacteria	984	Open in IMG/M
3300005540\|Ga0066697_10006400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5816	Open in IMG/M
3300005540\|Ga0066697_10134368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1456	Open in IMG/M
3300005543\|Ga0070672_101114524	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300005546\|Ga0070696_101600854	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	559	Open in IMG/M
3300005552\|Ga0066701_10218666	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1172	Open in IMG/M
3300005560\|Ga0066670_10102833	All Organisms → cellular organisms → Bacteria	1603	Open in IMG/M
3300006796\|Ga0066665_10412716	Not Available	1115	Open in IMG/M
3300006797\|Ga0066659_10155020	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1633	Open in IMG/M
3300006844\|Ga0075428_100777844	Not Available	1018	Open in IMG/M
3300006845\|Ga0075421_100075945	All Organisms → cellular organisms → Bacteria	4239	Open in IMG/M
3300006845\|Ga0075421_101330436	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	794	Open in IMG/M
3300006852\|Ga0075433_10015877	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	6191	Open in IMG/M
3300006854\|Ga0075425_100203379	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2276	Open in IMG/M
3300006871\|Ga0075434_101759906	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	627	Open in IMG/M
3300006914\|Ga0075436_100271714	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1211	Open in IMG/M
3300007255\|Ga0099791_10189858	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	967	Open in IMG/M
3300009012\|Ga0066710_100189377	All Organisms → cellular organisms → Bacteria → Proteobacteria	2915	Open in IMG/M
3300009012\|Ga0066710_101294671	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1130	Open in IMG/M
3300009094\|Ga0111539_12865331	Not Available	558	Open in IMG/M
3300009137\|Ga0066709_100000586	All Organisms → cellular organisms → Bacteria → Proteobacteria	20377	Open in IMG/M
3300009137\|Ga0066709_100174905	All Organisms → cellular organisms → Bacteria → Proteobacteria	2785	Open in IMG/M
3300009147\|Ga0114129_10465531	Not Available	1656	Open in IMG/M
3300009147\|Ga0114129_11346399	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	883	Open in IMG/M
3300009148\|Ga0105243_12489496	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	557	Open in IMG/M
3300009157\|Ga0105092_10426599	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	756	Open in IMG/M
3300009176\|Ga0105242_12500221	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	565	Open in IMG/M
3300010046\|Ga0126384_10471016	Not Available	1077	Open in IMG/M
3300010303\|Ga0134082_10417314	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	576	Open in IMG/M
3300010304\|Ga0134088_10159499	All Organisms → cellular organisms → Bacteria	1074	Open in IMG/M
3300010321\|Ga0134067_10143508	All Organisms → cellular organisms → Bacteria	847	Open in IMG/M
3300010335\|Ga0134063_10053585	Not Available	1767	Open in IMG/M
3300010335\|Ga0134063_10554140	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	581	Open in IMG/M
3300010336\|Ga0134071_10273016	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	845	Open in IMG/M
3300010397\|Ga0134124_10047842	All Organisms → cellular organisms → Bacteria	3590	Open in IMG/M
3300010398\|Ga0126383_10917103	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	963	Open in IMG/M
3300012199\|Ga0137383_11179060	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	551	Open in IMG/M
3300012200\|Ga0137382_10560912	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	814	Open in IMG/M
3300012202\|Ga0137363_10150230	All Organisms → cellular organisms → Bacteria	1829	Open in IMG/M
3300012202\|Ga0137363_10396526	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1149	Open in IMG/M
3300012202\|Ga0137363_11359707	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300012203\|Ga0137399_10284146	All Organisms → cellular organisms → Bacteria	1364	Open in IMG/M
3300012203\|Ga0137399_10484260	All Organisms → cellular organisms → Bacteria	1037	Open in IMG/M
3300012203\|Ga0137399_11433168	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	577	Open in IMG/M
3300012207\|Ga0137381_10862213	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	784	Open in IMG/M
3300012361\|Ga0137360_10591470	All Organisms → cellular organisms → Bacteria	949	Open in IMG/M
3300012362\|Ga0137361_10035308	All Organisms → cellular organisms → Bacteria → Proteobacteria	4008	Open in IMG/M
3300012397\|Ga0134056_1085616	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	510	Open in IMG/M
3300012402\|Ga0134059_1148097	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	664	Open in IMG/M
3300012410\|Ga0134060_1261571	Not Available	757	Open in IMG/M
3300012582\|Ga0137358_10017150	Not Available	4609	Open in IMG/M
3300012582\|Ga0137358_10363566	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	980	Open in IMG/M
3300012685\|Ga0137397_10436318	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	976	Open in IMG/M
3300012917\|Ga0137395_10021626	All Organisms → cellular organisms → Bacteria	3753	Open in IMG/M
3300012918\|Ga0137396_10176084	Not Available	1566	Open in IMG/M
3300012922\|Ga0137394_10517917	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1012	Open in IMG/M
3300012922\|Ga0137394_10797904	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	791	Open in IMG/M
3300012922\|Ga0137394_10903749	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300012922\|Ga0137394_10991469	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
3300012923\|Ga0137359_11444526	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	576	Open in IMG/M
3300012929\|Ga0137404_10050523	All Organisms → cellular organisms → Bacteria → Proteobacteria	3184	Open in IMG/M
3300012929\|Ga0137404_11577497	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	608	Open in IMG/M
3300012930\|Ga0137407_10032497	All Organisms → cellular organisms → Bacteria → Proteobacteria	4085	Open in IMG/M
3300012930\|Ga0137407_10126392	All Organisms → cellular organisms → Bacteria	2229	Open in IMG/M
3300013297\|Ga0157378_12128655	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	612	Open in IMG/M
3300013306\|Ga0163162_10723581	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1116	Open in IMG/M
3300014150\|Ga0134081_10297014	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	579	Open in IMG/M
3300014326\|Ga0157380_11448918	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300015053\|Ga0137405_1181495	Not Available	1359	Open in IMG/M
3300015371\|Ga0132258_13417577	All Organisms → cellular organisms → Bacteria	1090	Open in IMG/M
3300015373\|Ga0132257_102662508	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	651	Open in IMG/M
3300015374\|Ga0132255_106049587	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	512	Open in IMG/M
3300016294\|Ga0182041_10333880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1268	Open in IMG/M
3300016357\|Ga0182032_10228186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1435	Open in IMG/M
3300016387\|Ga0182040_10098340	All Organisms → cellular organisms → Bacteria	1979	Open in IMG/M
3300018431\|Ga0066655_10053980	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2085	Open in IMG/M
3300018431\|Ga0066655_10078871	All Organisms → cellular organisms → Bacteria → Proteobacteria	1787	Open in IMG/M
3300018431\|Ga0066655_10124080	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1489	Open in IMG/M
3300018433\|Ga0066667_10029476	All Organisms → cellular organisms → Bacteria → Proteobacteria	3063	Open in IMG/M
3300018433\|Ga0066667_10485934	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1015	Open in IMG/M
3300018468\|Ga0066662_10016867	All Organisms → cellular organisms → Bacteria → Proteobacteria	3985	Open in IMG/M
3300018468\|Ga0066662_10520207	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1090	Open in IMG/M
3300018468\|Ga0066662_11005917	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	826	Open in IMG/M
3300025899\|Ga0207642_10121869	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1347	Open in IMG/M
3300025910\|Ga0207684_10046489	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3682	Open in IMG/M
3300025910\|Ga0207684_11577220	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	532	Open in IMG/M
3300025923\|Ga0207681_11202987	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	637	Open in IMG/M
3300026089\|Ga0207648_10143108	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2108	Open in IMG/M
3300026285\|Ga0209438_1174904	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	565	Open in IMG/M
3300026315\|Ga0209686_1089260	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1083	Open in IMG/M
3300026328\|Ga0209802_1007087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6957	Open in IMG/M
3300026524\|Ga0209690_1196395	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	647	Open in IMG/M
3300026524\|Ga0209690_1215370	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	606	Open in IMG/M
3300027873\|Ga0209814_10163437	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	957	Open in IMG/M
3300027909\|Ga0209382_11046881	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	847	Open in IMG/M
3300028380\|Ga0268265_10994185	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	828	Open in IMG/M
3300028536\|Ga0137415_10058115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3735	Open in IMG/M
3300028792\|Ga0307504_10279714	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	621	Open in IMG/M
3300031184\|Ga0307499_10208659	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	605	Open in IMG/M
3300031198\|Ga0307500_10049440	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1011	Open in IMG/M
3300031538\|Ga0310888_10505871	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	723	Open in IMG/M
3300031561\|Ga0318528_10379864	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	758	Open in IMG/M
3300031720\|Ga0307469_10012600	All Organisms → cellular organisms → Bacteria → Proteobacteria	4242	Open in IMG/M
3300031720\|Ga0307469_10121003	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1893	Open in IMG/M
3300031720\|Ga0307469_10349168	All Organisms → cellular organisms → Bacteria	1241	Open in IMG/M
3300031736\|Ga0318501_10058908	All Organisms → cellular organisms → Bacteria	1822	Open in IMG/M
3300031740\|Ga0307468_100299381	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1166	Open in IMG/M
3300031740\|Ga0307468_100620709	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	887	Open in IMG/M
3300031740\|Ga0307468_101576667	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	612	Open in IMG/M
3300031740\|Ga0307468_101892418	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	568	Open in IMG/M
3300031820\|Ga0307473_10016954	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2857	Open in IMG/M
3300031820\|Ga0307473_10096953	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1559	Open in IMG/M
3300031854\|Ga0310904_10936636	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	614	Open in IMG/M
3300031954\|Ga0306926_10235429	All Organisms → cellular organisms → Bacteria	2270	Open in IMG/M
3300032051\|Ga0318532_10348669	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	525	Open in IMG/M
3300032174\|Ga0307470_11355114	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	585	Open in IMG/M
3300032180\|Ga0307471_100081648	All Organisms → cellular organisms → Bacteria → Proteobacteria	2847	Open in IMG/M
3300034115\|Ga0364945_0227337	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	573	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	81.88%
Host-Associated	Host-Associated	18.12%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.16%
Plants	Host-Associated → Plants	18.12%
Aquatic	Environmental → Aquatic	0.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	80.43%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.04%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.07%
Freshwater	Environmental → Aquatic → Freshwater	0.72%
Floodplain	Environmental → Terrestrial → Floodplain	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	69.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.59%
Loam	Environmental → Terrestrial → Soil → Loam	10.87%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.17%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.45%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.72%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.88%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	23.19%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	13.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.52%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	4.35%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.17%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.45%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.72%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	20.29%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	13.04%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	10.14%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.70%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	7.25%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	7.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.52%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	4.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.17%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.17%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.45%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.45%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.45%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.72%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.72%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.72%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000443	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B clc assemly	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012397	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012402	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012410	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026315	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300034115	Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPgaii200_09417531	2228664022	Soil	MNRTRRTIGFSAFAMLVVLGGGWALEKAHSNSQRQGGAAVVEPANDAATTPLSDEPLNVQSAPADSSPEYDRSDLLLIQG
INPhiseqgaiiFebDRAFT_1016683591	3300000364	Soil	MNRTRRTIGLSVFVMLVVLGTGWALEKKASSNSQKQGGAAVTEPAKASEPSDEPSDVKPASTDSNQEYDRSDLLLTQG*
F12B_112531551	3300000443	Soil	LLKWALGFAEEDRMMTRTRRTIGLSALVMFVVLGTGWAVEKASSNSHRQGGAAVSEPAKANDAVTTPEPLDVRPVSTDSEYDRSDLLLSQG*
F24TB_113122912	3300000550	Soil	MMNRTRRTIGFSAFAMLVVLGGGWALEKAHSNSQRQGGAAVVEPASDAATMPLSDEPLNVQPAPADSSPEYDRSDLLLIQG*
F14TC_1042850243	3300000559	Soil	MNRTRRTIGLSVFVMLVVLGTGWALEKKAPSNSHKQGGAAVTEPAKASEPSXXXXXXXXXATDSNQEYDRSDLLLSQG*
F14TC_1049132481	3300000559	Soil	MTRTRRTIGLSALVMFVVLGTGWAVEKASSNSHRQGGAAVSEPAKANDAVTTPEPLDVRPVSTDSEYDRSDLLLSQG*
F14TB_1012306132	3300001431	Soil	MNRTRRTIGFSAFAMLVVLGGGWALEKAHSNSQRQGGAAVVEPASDAATMPLSDEPLNVQPAPADSSPEYDRSDLLLIQG*
JGI25382J43887_100805842	3300002908	Grasslands Soil	MNRTRRTIGLSAFTMLIVLGTGWTLEKASSNSHTQGGAAVSEPAKASDAAAAPVSREPLDVQPAATDSSPAYDRSDLLLSQG*
Ga0066672_101901252	3300005167	Soil	MMNRTRRTIGVSAFAMLVVLGTGWALEKASSNSHRQGGAAVSEPADAGDAAPTPLSREPLDVQPASTDSTQEYDRSDLILSQG*
Ga0066672_107433251	3300005167	Soil	MNRTRRTIGLSAFVMLAVLGTGWALEKASSNSRTKDGAAVSEPAKASDAIPSSREPLDVQPAATGASPEYDRSDLILSQG*
Ga0066680_100381232	3300005174	Soil	MNRTRRTIGLSAFVMLAVLGTGWALEKASSNSRTKDGAAVSEPAQASDAVPTPASREPRDVQPAATDASPEYDRSDLILSQG*
Ga0066685_1000039412	3300005180	Soil	MNRTRRTIGLSALVILVVLGTGWALEKAASSHAQRGTAVIEPATASDAVTTPLSVEPGDVQPAATEPSQEYDRSDLLLSLG*
Ga0066685_100013675	3300005180	Soil	MMNRTQRTIGLSAFVMLAVLGTGWALEKASGRSHTQGATSVSGPARPRGAVTTPLWREPVDAQPAGTDSSPEYDRSDLALSQG*
Ga0066676_106906142	3300005186	Soil	AFVMLAVLGTGWALEKASSNSRTKDGAAVSEPAKASDAIPSSREPLDVQPAATGASPEYDRSDLILSQG*
Ga0070703_102528072	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MNRTRRTIGLSVFVMLIVLGTGWALEKKASSNSQKQGGAAVTEPAKASEPSDESPEVKPAATDSNQEYDRSDLVLSQG*
Ga0070701_108279621	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MNRTRRTIGLSVFVMLVVLGTGWALEKKASSSSQKQGGAAVTEPAKASEPSDESFEVKPAATDSNQEYDRSDLVLSQG*
Ga0070708_1000947364	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MNRNWRTIGLSAFVMLAVLGTGWALENTSSGSRTQGTAAVSGPAKASDPVTTPATREPSDVRPAATDSSPEYDRSDLILSQG*
Ga0070708_1001025952	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MNRTRRTIGLSAFVMLAVLGTGWALEKASSNSRTKDGAAVSEPAKASDAVPTPASREPRDVQPAATDASPEYDRSDLILSQG*
Ga0066689_100283314	3300005447	Soil	MNRNWRTIGLSAFVMLAVLGTGWALENASSGSRTQGTAAVSGPAKASDPVTTPATREPSDVRPAATDSSPEYDRSDLILSQG*
Ga0070706_1009285252	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	AVLGTGWALEKASSNSRTKDGAAVSEPAKASDAVPTPASREPRDVQPAATDASPEYDRSDLILSQG*
Ga0070699_1006228121	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MNRNWRTIGLSAFVMLAVLGTGWALENASSGSRTQGTAAVSGPAKASGPVTTPATREPSDVRPAATDSSPEYDRSDLILSQG*
Ga0066697_100064002	3300005540	Soil	MNRTRRTIGLSAFVMLAVLGTGWALEKASSNSRTKDGAAVSEPAKASDAIPTSREPLDVQPAATGASPEYDRSDLILSQG*
Ga0066697_101343682	3300005540	Soil	MNRTRRTIGLSALVILVVLGTGWALEKAASSHAQRGTAVIDPATASDAVTTPLSVEPGDVQPAATEPSQEYDRSDLLLSLG*
Ga0070672_1011145242	3300005543	Miscanthus Rhizosphere	VLGTGWALEKKASSNSQKQGGAAVTEPAKASEPSDESFEVKPAATDSNQEYDRSDLVLSQG*
Ga0070696_1016008542	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MSRTRRTIGLSVFVMLVVLGTGWALEKKASSNSHKQGGAAVTEPAKASEPSDVKPAATDSNQEYDRSDLLLSQG*
Ga0066701_102186662	3300005552	Soil	MNRNWRTIGLSAFVMLAVLGTGWALENASSGSRTQGTAAVSGPEKASDPVTTPATREPSDVRPAATDSSPEYDRSDLILSQG*
Ga0066670_101028331	3300005560	Soil	DRMMNRTRRTIGVSAFAMLVVLGTGWALEKASSNSHRQGGAAVSEPADAGDAAPTPLSREPLDVQPASTDSTQEYDRSDLILSQG*
Ga0066665_104127162	3300006796	Soil	MNRTRRTIGLSAFVMLAVLGTGSALEKASSNSRTKDGAAVSEPAKASDAIPSSREPLDVQPAATGASPEYDRSDLILSQG*
Ga0066659_101550203	3300006797	Soil	MNRNWRTIGLSAFVMLAVLGTGWALENASSGSRTQGTAAVSGPAKASDPVTTPATREPSDVRPAATDSSPEYDRSEHILSQG*
Ga0075428_1007778443	3300006844	Populus Rhizosphere	MNRTRRTIGLSAFAMLVVLGTGWALEKAHSNSQRQGGAAVVEPASDAATTPLSDEPLNVQPAPADS
Ga0075421_1000759456	3300006845	Populus Rhizosphere	MMNRTRRTIGLSAFAMLVVLGTGWALEKAHSNSQRQGGAAVVEPASDAATTPLSDEPLNVQPAPADSSPEYDRSDLLLIQG*
Ga0075421_1013304361	3300006845	Populus Rhizosphere	MNRTWRTIGVSAFVMLAVLGTGWALEKASSGSRTQGTAAVSGPAKTSDPVSTPATREPSDVRPAATDSSPEYDRSDLTLSQG*
Ga0075433_100158779	3300006852	Populus Rhizosphere	MSRTRRTIGLSVFVMLVVLGTGWALEKKASSKSQRQGGAAVTEPAKASEPSDVKPAATDSNQEYDRSDLLLSQG*
Ga0075425_1002033794	3300006854	Populus Rhizosphere	MIRTRRTIGLSAFVMLAVLGTGWALEKASSNSRTKDGAAVSEPAKASDAVPTPASREPRDVQPAATDASPEYDRSDLILSQG*
Ga0075434_1017599062	3300006871	Populus Rhizosphere	VNRNWRTIGFSAFVMLAVLGTGWALENASSGSRTQGTAAVSGPAKASDPVTTPATREPSDVRPAATDSSPEYDRSDLILSQG*
Ga0075436_1002717142	3300006914	Populus Rhizosphere	VLGTGWALEKASSNSRTKDGAAVSEPAKASDAVPTPASREPRDVQPAATDASPEYDRSDLILSQG*
Ga0099791_101898582	3300007255	Vadose Zone Soil	AFAAMDSRDAEEERMMNRTRRTIGIGAFAMLVVLGTGWAIEKTASNAPRQSEDVTSEPAKANDADATPFLGEPVDVQPAATDSRQENDRSDLILIHG*
Ga0066710_1001893772	3300009012	Grasslands Soil	MMNRTRRTIGVSAFAMLVVLSTGWALEKASSNSHRQGGAAVGEPADAGDAAPTPLSREPLDVQPASTDSTQEYDRSDLILSQG
Ga0066710_1012946711	3300009012	Grasslands Soil	MNRTRRTIGLSAFTMLILLGTGWTLEKASSNSHTQGGAAFSEPAKASDAAAAPVSREPLDVQPAATDSSPAYDRSDLLLSQG
Ga0111539_128653312	3300009094	Populus Rhizosphere	MSRTRRTIGLSVFVMLVVLGTGWALEKKASSKSQRQGGAAVTEPAKASEPSDVKPAATDSNQEYDRSDLLLNQG*
Ga0066709_1000005863	3300009137	Grasslands Soil	MDSRREDRTMNRTRRTIGLSALVILVVLGTGWALEKAASSHAQRGTAVIEPATASDAVTTPLSVEPGDVQPAATEPSQEYDRSDLLLSLG*
Ga0066709_1001749052	3300009137	Grasslands Soil	MLVVLGTGWALEKASSNSHRQGGAAVSEPADAGDAAPTPLSREPLDVQPASTDSTQEYDRSDLILSQG*
Ga0114129_104655312	3300009147	Populus Rhizosphere	MMNRTRRTIGFSAFAVLVVLGGGWALEKAHSNSQRQGGAAVVEPASDAATTPLSDEPLNVQPAPADSSPEYDRSDLLLIQG*
Ga0114129_113463992	3300009147	Populus Rhizosphere	MMNRTWRTIGVSAFVTLAVLGTGWALEKASSGSRTQGTAAVSGPAKTSDPVSTPAPREPSDVRPAATDSSPEYDRSDLTLSQG*
Ga0105243_124894962	3300009148	Miscanthus Rhizosphere	MNRTRRTIGLSVFVMLVVLGTGWALEKKASSNSQKQGGAAVTEPAKASDSSDESFEVKPAATDSNQEYDRSDLVLSQG*
Ga0105092_104265991	3300009157	Freshwater Sediment	MMNKTRRTIGLSALVIFIVLGTGWALEKADRNAHRQGGAAVSEPAKANDAVTAPNAQEPKDEQPAATDTIQEYDRSDLILSQG*
Ga0105242_125002211	3300009176	Miscanthus Rhizosphere	MNRTRRTIGLSVFVMLVVLGTGWALEKKASSNSQKQGGAAVTEPAKASDSSDESFEVKPAATDSNQEYDRSDLVLS
Ga0126384_104710161	3300010046	Tropical Forest Soil	MRRDVMMNRTWRTISLGTFVVLAVLGTAGALGRASSSSHTQGKAAVSGSAKASDAVPALLSREPMDVQPAAIDSSPEYDRSDLTLSQG*
Ga0134082_104173142	3300010303	Grasslands Soil	MNRNWRTIGLSAFVMLAVLGTGWALENASSGSRTQGTAAVSGPAKASDPVTTPATREPSDVRPAATDSSPEYDRSDL
Ga0134088_101594992	3300010304	Grasslands Soil	MKNRTRRTIGLSAFVMLVVLGTGWALEKASSNAHRKGGAEVSQPGKASDAATTPLSHEPVNAQPPTTDSSQEYDRSDLLLSQG*
Ga0134067_101435082	3300010321	Grasslands Soil	VSAFAMLVVLGTGWALEKASSNSHRQGGAAVSEPADAGDAAPTPLSREPLDVQPASTDSTQEYDRSDLILSQG*
Ga0134063_100535852	3300010335	Grasslands Soil	MNRTRRTIGLSAFVMLAVLGTGWALEKASSNSRTKDGAAVSEPAKASDAIPSSREPLDVQPAATGSSPEYDRSDLILSQG*
Ga0134063_105541402	3300010335	Grasslands Soil	MMNRTRRTIGVSAFAMLVVLGTGWALEKASGRSHTQGATSVSGPARPRGAVTTPLWREPVDAQPAGTDSSPEYDRSDLALSQG*
Ga0134071_102730162	3300010336	Grasslands Soil	MKNRTRRTIGLSAFVMLVVLGTGWALEKASSNAHRKGGAEVSQPGKASDAATTPLSHEPVNAQPPTTDSSQE
Ga0134124_100478426	3300010397	Terrestrial Soil	MNRTRRTIGLSVFVMLVVLGTGWALEKKASSNSQKQGGAAVTEPAKASEPSDESFEVKPAATDSNQEYDRSDLVLSQG*
Ga0126383_109171032	3300010398	Tropical Forest Soil	MNRTWRTIGLSAFVMLVVLGTGWALEKPSSSSRTQGGAAVSDPAKESDAVPTTPSREPSQVHPAATGSSPEYDRSDLILSQG*
Ga0137383_111790601	3300012199	Vadose Zone Soil	MNRTRRTIGLSVFVMLVVLGTGWALEKKASSNSQRQGGTATTEPAKASEPSDVKPAATDSDQEYDRSDLLLS
Ga0137382_105609122	3300012200	Vadose Zone Soil	MNRTRRTIGLSVFVMLVVLGTGWALEKKASSNSQRQGGTATTEPAKASEPSNVKPAATDSDQEYDRSDLLLSQG*
Ga0137363_101502302	3300012202	Vadose Zone Soil	MTLGFAKEETMANRTRWTIGLSAFVVLVVLGTGWAIEKASSNSHRQGGAAVSEPAKASDAETTPLSREPLDVQPAATDTEYDRSDLILSQG*
Ga0137363_103965262	3300012202	Vadose Zone Soil	MNRTRRTIGLSVFVMLVVLGTGWALEKKASSNSQRQGGTATTEPAKASEPSDVKPAATDSDQEYDRSDLLLSQG*
Ga0137363_113597072	3300012202	Vadose Zone Soil	MIGLGVLVSLAVLGTGWALEKAASTSHRQGGAAVSEPAKASDAVATPPSHEPLNVQPAATDSSQEYDRSDLLLSQG*
Ga0137399_102841462	3300012203	Vadose Zone Soil	MVNRTRRTIGLSAFVMLVVLGTGWALEKASSNPHRQSGAAVNEPAKASDAVTTPLSREPMDVQPAATDSSPEYDRSDLLLSQG*
Ga0137399_104842602	3300012203	Vadose Zone Soil	MNRTRRMIGLGVLVSLAVLGTGWALEKAASTSHRQGGAAVSEPAKASDAVATPPSHEPLNVQPAATDSSQEYDRSDLLLSQG*
Ga0137399_114331681	3300012203	Vadose Zone Soil	MKNRTRRTIGLSAFVMLVVLGTGWALEKASSNAHRKGGAAASQSDAATTPLSHEPVNAQPPTTDSSPEYDRSDLLLSQG*
Ga0137381_108622131	3300012207	Vadose Zone Soil	MNRTRRTIGLSVFVMLVVLGTGWALEKKASSNSQRQGGTATTEPAKASEPSDVKPAATDSDQEYDRSDLPLSQG*
Ga0137360_105914701	3300012361	Vadose Zone Soil	TIGLSAFVVLVVLGTGWAIEKASSNSHRQGGAAVSEPAKASDAETTPLSREPLDVQPAATDSEYDRSDLILSQG*
Ga0137361_100353082	3300012362	Vadose Zone Soil	MTLGFAKEETMANRTRWTIGLSAFVVLVVLGTGWAIEKASSNSHRQGGAAVSEPAKASDAETTPLSREPLDVQPAATDSEYDRSDLILSQG*
Ga0134056_10856162	3300012397	Grasslands Soil	EDRTMNRTRRTIGLSALVILVVLGTGWALEKAASSHAQRGTAVIEPATASDAVTTPLSVEPGDVQPAATEPSQEYDRSDLLLSLG*
Ga0134059_11480971	3300012402	Grasslands Soil	MNRTRRTIGLSVFVMLVVLGTGWALEKKASRNSQRQGGTATTEPAKASEPSDVKPAATDSDQEYDRSDLILSQG*
Ga0134060_12615711	3300012410	Grasslands Soil	MNRTRRTIGLSAFVILAVLGTGWALEKASSNSRTKDGAAVSEPAKASDAIPTSREPLDVQPAATGASPEYDRSDLILSQG*
Ga0137358_100171504	3300012582	Vadose Zone Soil	MIVLSAFIMLVVIGMGWALEKASSNSQTRGGATVSGPAKASDPVSTTVDVRPAATDSSSKYDRSDLILSQG*
Ga0137358_103635661	3300012582	Vadose Zone Soil	MTLEFSRREDRTMNRTRRMIGLGVLVSLAVLGTGWALEKAASTSHRQGGAAVSEPAKASDAVATPPSHEPLNVQPAATDSSQEYDRSDLLLSQG*
Ga0137397_104363182	3300012685	Vadose Zone Soil	MKNRTRRTIGLSAFVMLVVLGTGWALEKASSNAHRNGGAAGSQPAKASDAATTPLSHEPVNAQPPTTDSSQEYDRSDLLLSQG*
Ga0137395_100216265	3300012917	Vadose Zone Soil	MNRTRRTIGLSVFVMLVVLGTGWALEKKASSNSQRQGGTATTEPAKASEPSDVEPAATDSDQEYDRSDLLLSQG*
Ga0137396_101760841	3300012918	Vadose Zone Soil	MVNRTRRTIGLSAFVMLVVLGTGWALDKASSNSHRQSGAAVNEPAKASDAVTTPLSREPMDVQPAATDSSPEYDRSDLLLSQG*
Ga0137394_105179172	3300012922	Vadose Zone Soil	MNRTRRTIGLSVFVMLVVMGTGWALEKKASSNSQRQGGTATTEPAKASEPSDVKPAATDSDQEYDRSDLLLSQG*
Ga0137394_107979042	3300012922	Vadose Zone Soil	MVNRTRRTIGLSAFVMLVVLGTGWALEKASSNSHRQSGAAVNEPAKASDAVTTPLSREPMDVQPAATDSSPEYDRSDLLLSQG*
Ga0137394_109037493	3300012922	Vadose Zone Soil	AEGDEMKNRTRRTIGLSAFVMLVVLGTGWALEKASSNAHRKGGAAVSQPGKASDAPTTPLSHEPVNAQPPTTDSSQEYDRSDLLLSQG*
Ga0137394_109914692	3300012922	Vadose Zone Soil	SFAEGDEMKNRTRRTIGLSAFVMLVVLGTGWALEKASSNAHRKGGAAASQSDAATTPLSHEPVNAQPPTTDSSPEYDRSDLLLSQG*
Ga0137359_114445262	3300012923	Vadose Zone Soil	MFDATQPASRREDRAMTMTRRAVGIGAVIVLAVLGTGWALEKAASTSHRQGGAAVSEPAKASDAVATPPSHEPLNVQPAATDSSQEYDRSDLLLSQG*
Ga0137404_100505234	3300012929	Vadose Zone Soil	MTLGFAKEETMANRTRWTIGLSAFVVLVVLGTGWAIEKASSNSHRQGGAAVSEPAKANDAVTTPLSREPLDVQPAATDSEYDRSDLILSQG
Ga0137404_115774971	3300012929	Vadose Zone Soil	AKEETMANRTRWTIGLSAFVVLVVLGTGWAIEKASSNSHRQGGAAVSEPAKASDAETTPLSREPLDVQPAATDSEYDRSDLILSQG*
Ga0137407_100324974	3300012930	Vadose Zone Soil	MTLGFAKEETMANRTRRTIGLSAFVVLVVLGTGWAIEKASSNSHRQGGAAVSEPAKANDAVTTPLSREPLDVQPAATDSEYDRSDLILSQG*
Ga0137407_101263923	3300012930	Vadose Zone Soil	MKNRTRRTIGLSAFVMLVVLGTGWALGKASSNAHRNGGAAGSQPAKASDAATTPLSHEPVNAQPPTTDSSQEYDRSDLLLSQG*
Ga0157378_121286551	3300013297	Miscanthus Rhizosphere	MSRTRRTIGLSVFVMLVVLGTGWALEKKASSNSQKQGGAAVTEPAKASDSSDESFEVKPAATDSNQEYDRSDLVLSQG*
Ga0163162_107235812	3300013306	Switchgrass Rhizosphere	MSRTRRTIGLSVFVMLVVLGTGWALEKKASSNSHKQGGAAVTEPAKASEPSDVKPAATDSNQEYDRSDLVL
Ga0134081_102970141	3300014150	Grasslands Soil	MNRTRRTIGLSAFVMLAVLGTGWALEKASSNSRTKDGAAVSEPAKASDAIPSSREPLDEQPAATGASPEYDRSDLILSQG*
Ga0157380_114489181	3300014326	Switchgrass Rhizosphere	MNRTRRTIGLSVFVMLVVLGTGWALEKKASSSSQKQGGAAVTEPAKASEPSDESFEVKPAATDSNHEYDRSDLVLSQG*
Ga0137405_11814952	3300015053	Vadose Zone Soil	MTLGFAKEETMANRTRWTIGLSAFVVLVVLGTGWAIEKASSNSHRQGGAAVSEPAKANDAVTTPLSREPLDVQPAATDSEYDRSDLILSQG*
Ga0132258_134175771	3300015371	Arabidopsis Rhizosphere	MNRTRRTIGLSVFVMLVVLGTGWALEKKASSNSQRQGGAAVTEPATASEPSDVKPAATDSNQEYDRSDLLLSQG*
Ga0132257_1026625081	3300015373	Arabidopsis Rhizosphere	MSRTRRTIGLSVFVMLVVLGTGWAVEKKASSKSQRQGGAAVTEPAKASEPSNVKPAATDSNQEYDRSDLLLSQG*
Ga0132255_1060495871	3300015374	Arabidopsis Rhizosphere	MNRAWRTIGLSVFVMLVVLGTGWALEKKASSNSQRQGGAAVTEPATASEPSDVKPAATASNQDYDRSDLPLSQG*
Ga0182041_103338802	3300016294	Soil	MDRTRRTIGLSAFVMLFVLGAGWALEKASSNSHTRSGGAVSEPAKASEVVTTPVSREPLDVQPAATHSSPAYDRSDLILSQG
Ga0182032_102281861	3300016357	Soil	MDRTRRTIGLSAFVMLVVLGAGWALEKASSNSHTRSGGAVSEPAKASEVVTTPVSREPLDVQPAATHSSPA
Ga0182040_100983403	3300016387	Soil	MLVVLGAGWALEKASSNSHTRSGGAVSEPAKASEVVTTPVSREPLDVQPAATHSSPAYDRSDLILSQG
Ga0066655_100539803	3300018431	Grasslands Soil	MNRTRRTIGLSAFVMLAVLGTGWALEKASSNSRTKDGAAVSEPAKASDAIPTSREPLDVQPAATGASPEYDRSDLILSQG
Ga0066655_100788712	3300018431	Grasslands Soil	MNRTRRTIGLSALVILVVLGTGWALEKAASSHAQRGTAVIEPATASDAVTTPLSVEPGDVQPAATEPSQEYDRSDLLLSLG
Ga0066655_101240803	3300018431	Grasslands Soil	MMNRTQRTIGLSAFVMLAVLGTGWALEKASGRSHTQGATSVSGPARPRGAVTTPLWREPVDAQPAGTDSSPEYDRSDLALSQG
Ga0066667_100294764	3300018433	Grasslands Soil	MMNRTRRTIGVSAFAMLVVLGTGWALEKASSNSHRQGGAAVSEPADAGDAAPTPLSREPLDVQPASTDSTQEYDRSDLILSQG
Ga0066667_104859342	3300018433	Grasslands Soil	MNRTRRTIGLSAFVMLAVLGTGWALEKASSNSRTKDGAAVSEPAKASDAIPSSREPLDVQPAATGASPEYDRSDLILSQG
Ga0066662_100168672	3300018468	Grasslands Soil	MNRTRRTIGLSAFTMLIVLGTGWTLEKASSNSHTQGGAAVSEPAKASDAAAAPVSREPLDVQPAATDSSPAYDRSDLLLSQG
Ga0066662_105202071	3300018468	Grasslands Soil	MNRTRRTIGLSAFVMLAVLGTGWALEKASSNSRTKDGAAVSEPAKASDAVPTPASREPRDVQPAATDASPEYDRSDLILSQG
Ga0066662_110059171	3300018468	Grasslands Soil	MNRNWRTIGLSAFVMLAVLGTGWALENASSGSRTQGTAAVSGPAKASDPVTTPATREPSDVRPAATDSSPEYDRSDLILSQG
Ga0207642_101218692	3300025899	Miscanthus Rhizosphere	MSRTRRTIGLSVFVMLVVLGTGWALEKKASSNSHKQGGAAVTEPAKASEPSDVKPAATDSNQEYDRSDLLLSQG
Ga0207684_100464894	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MNRNWRTIGLSAFVMLAVLGTGWALENTSSGSRTQGTAAVSGPAKASDPVTTPATREPSDVRPAATDSSPEYDRSDLILSQG
Ga0207684_115772201	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MNRNWRTIGLSAFVMLAVLGTGWALENASSGSRTQGTAAVSGPAKASDPVTTPATREPSDVRPAATDSS
Ga0207681_112029872	3300025923	Switchgrass Rhizosphere	MNRTRRTIGLSVFVMLVVLGTGWALEKKASSNSHKQGGAAVTEPAKASEPSDVKPAATDSNQEYDRSDLVLSQG
Ga0207648_101431082	3300026089	Miscanthus Rhizosphere	MNRTRRTIGLSVFVMLVVLGTGWALEKKASSSSQKQGGAAVTEPAKASEPSDVKPAATDSNQEYDRSDLLLSQG
Ga0209438_11749041	3300026285	Grasslands Soil	MNRTRRTIGLSVFVMLVVLGTGWALEKKASSNSQRQGGTATTEPAKASEPSDVKPAATDSDQEYDRSDLLLSQG
Ga0209686_10892602	3300026315	Soil	MNRTRRTIGLSAFVMLAVLGTGWALEKASSNSRTKDGAAVSEPAKASDAIPSSREPLDVQPAATSASPEYDRSDLILSQG
Ga0209802_10070876	3300026328	Soil	MNRTRRTIGLSAFVMLAVLGTGWALEKASSNSRTKDGAAVSEPAQASDAVPTPASREPRDVQPAATDASPEYDRSDLILSQG
Ga0209690_11963951	3300026524	Soil	MNRNWRTIGLSAFVMLAVLGTGWALENASSGSRTQGTAAVSGPEKASDPVTTPATREPSDVRPAATDSSPEYDRSDLILSQG
Ga0209690_12153701	3300026524	Soil	MNRTRRTIGLSAFVMLAVLGTGWALEKASSNSRTKDGAAVSEPAQASDAVPTPASREPRDVQPAATDAS
Ga0209814_101634371	3300027873	Populus Rhizosphere	MNRTWRTIGVSAFVMLAVLGTGWALEKASSGARTQGTAAVSGPAKTSDPVSTSATREPSDVRPAATDSSPEYDRSDLLLIQG
Ga0209382_110468811	3300027909	Populus Rhizosphere	MMNRTRRTIGLSAFAMLVVLGTGWALEKAHSNSQRQGGAAVVEPASDAATTPLSDEPLNVQPAPADSSPEYDRSDLLLIQG
Ga0268265_109941852	3300028380	Switchgrass Rhizosphere	MNRTRRTIGLSVFVMLVVLGTGWALEKKASSSSQKQGGAAVTEPAKASEPSDESFEVKPAATDSNQEYDRSDLVLSQG
Ga0137415_100581154	3300028536	Vadose Zone Soil	MVNRTRRTIGLSAFVMLVVLGTGWALDKASSNSHRQSGAAVNEPAKASDAVTTPLSREPMDVQPAATDSSPEYDRSDLLLSQG
Ga0307504_102797141	3300028792	Soil	MTTAPLVGVRRALQWTIDFAEEDSAMNRTRRTIGLSAFVILAVLGTGWALEKAASTSRSHGGAAVSEPAKASDAVTSPVSGEPDERPAATDSNQEYDRSDLILSQG
Ga0307499_102086591	3300031184	Soil	MNRTRRTIGLSVFVMLVVLGTGWALEKKASSNSQRQGGAPVTEPAKASEPSDVQPAATDSNQEYDRSDLLLSQG
Ga0307500_100494401	3300031198	Soil	MNRTRRTIGLSVFVMLVVLGTGWALEKKASSNSQRHGGAAVTEPAKASEPSDVKPAATDSNQEYDRSDLLLSQG
Ga0310888_105058711	3300031538	Soil	MSRTRRTIGLSVFVMLVVLGTGWAVEKKASSKSQRQGGAVVTEPAKASEPSDVKPAATDSNQEYDRSDLLLSQG
Ga0318528_103798641	3300031561	Soil	MDRTRRTIGLSAFVMLVVLGAGWALEKASSNSHTRSGGAVSEPAKASEVVTTPVSREPLDVQPAATHSSPAYDRSDLILSQG
Ga0307469_100126005	3300031720	Hardwood Forest Soil	MNRTRRMIGLSVFVSLAVLGTGWALEKATSTSHRQGGAAVSEPAKARDAGATPLSHEPLNVQPAAIDSSQEYDRSDLLLSQG
Ga0307469_101210031	3300031720	Hardwood Forest Soil	MKNRTRRTIGLSAFVMLVVLGTGWALEKGSSNAHRKGGAGVSEPAKASDAATTPLSHEPVNAQPPTTDSSPEYDRSDLLLIQG
Ga0307469_103491682	3300031720	Hardwood Forest Soil	MKNRTRWTIGLSAFVMLVVLGTGSALERASSNAHRQAGAVGSQPARASDAAAAPISHEPVSAHPPTTDSSPEYDRSDLLLIQG
Ga0318501_100589083	3300031736	Soil	IGLSAFVMLVVLGAGWALEKASSNSHTRSGGAVSEPAKASEVVTTPVSREPLDVQPAATHSSPAYDRSDLILSQG
Ga0307468_1002993812	3300031740	Hardwood Forest Soil	MKNRTRWTIGLSAFVMLVVLGTGSALEKASSNAHRQAGAVGSQPARASDAAAAPISHEPVSAHPPTTDSSPEYDRSDLLLIQG
Ga0307468_1006207092	3300031740	Hardwood Forest Soil	MSRTRRTIGLSVFVMLVVLGTGWALEKKASSNSHRQGGAEVTEPAKASEPSDVKPAATDSNQEYDRSDLLLSQG
Ga0307468_1015766672	3300031740	Hardwood Forest Soil	MMNRTRRTIGLSALVILIVLGTGWALEKAASNGHRQGGAAVSEPAKANDAVTAPSSQEPKDEQPAATETIQEYDRSDLILSQG
Ga0307468_1018924181	3300031740	Hardwood Forest Soil	MNRTRRMIGLSVFVSLAVLGTGWALEKATSTSHRQGGAAVSEPAKARDVGATPLSHEPLNVQPAATDSSQEYDRSDLLLSQG
Ga0307473_100169542	3300031820	Hardwood Forest Soil	MNRTRRMIGLSVFVSLAVLGTGWALEKATSTSHRQGGAAVSEPAKARDAGATPLSHEPLNVQPAATDSSQEYDRSDLLLSQG
Ga0307473_100969533	3300031820	Hardwood Forest Soil	MSRTRRTIGLSVFVMLVVLGTGWAVEKKTSSKSHRQGGAAVTEPAKANEPSDVKPAATDSNQEYDRSDLLLSQG
Ga0310904_109366362	3300031854	Soil	MSRTRRTIGLSVFVMLVVLGTSWAVEKKASSKSQRQGGAAVTEPAKASEPSDVKPAATDSNQEYDRSDLLLSQG
Ga0306926_102354292	3300031954	Soil	MDRTRRTIGLSAFVMLVVLGAGWALEKASSNSHTQSGAAVSEPAKASEVVTTPVSREPLDVQPAATHSSPAYDRSDLILSQG
Ga0318532_103486691	3300032051	Soil	MDRTRRTIGLSAFVMLVVLGAGWALEKASSNSHTRSGGAVSEPAKASEVVTTPVSREPLDVQPAATHSSPAYDRSDLI
Ga0307470_113551141	3300032174	Hardwood Forest Soil	MNRTRRTIGLSVFVMLVVLGTGWALEKKASSNSHRQGGAEVTEPAKASEPSDVKPAATDSNQEYDRSDLLLSQG
Ga0307471_1000816485	3300032180	Hardwood Forest Soil	MNKTRRMIGLSALVILVVLGTGWALAKASGSHTPRGAVSEPAKPSDAVTTPSSLELRDTQPAATESSQEYDRSDLLLIQG
Ga0364945_0227337_3_221	3300034115	Sediment	MKKRTRRRIGISVFVMLVVLGTGWELERAASSSHRQDRGSGAEPAKASDAVTTPLSREPWDDLPAATDPSQEY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F056166

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences