Scaffold Ga0071116_1004276

Overview

Basic Information

• Taxon OID: 3300005077
• Scaffold ID: Ga0071116_1004276
• Source Dataset Name: Water filled karst sinkhole microbial communities from Little Salt Spring, North Port, Florida - Phototrophic mat 2014
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Pennsylvania State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17835
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (62.79%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Sinkhole → Water Filled Karst Sinkhole Microbial Communities From Little Salt Spring, North Port, Florida

Source Dataset Sampling Location

• Location Name: North Port, Florida
• Coordinates
  • Lat. (^o): 27.074722
  • Long. (^o): -82.233333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005563	Metagenome / Metatranscriptome	396	Y
F065781	Metagenome / Metatranscriptome	127	Y
F093347	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0071116_100427620	F093347	AGGAGG	MKQKKLLQEVYKACFDHDAEKLAELRKQEFQKILKRRSEGKQFTPKWTIVRL*
Ga0071116_10042763	F005563	GGA	MIDYHEALREMHKGNVVKYVGTVNGNVMSDNGASFCMCRGCIFLFDNGVIKWNKLGYMVYDPDFRYELTSETVDPRAWKPEKNQDRKSIWSKLGYSRIGRNNV*
Ga0071116_10042766	F065781	GGAG	MNEGERAGWWAVVYLLMVGAAAYFTIFMIIFSFVKKLFLELK*