Metagenome / Metatranscriptome Family F093347

Overview

Basic Information

• Family ID: F093347
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 106
• Average Sequence Length: 51 residues
• Representative Sequence: MKQKKLIAELYKACFDHDAKKMAELRKEEFQKILKRKAEGKHFTHRWTVVQI
• Number of Associated Samples: 79
• Number of Associated Scaffolds: 106

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 100.00 %
• % of genes near scaffold ends (potentially truncated): 0.00 %
• % of genes from short scaffolds (< 2000 bps): 0.00 %
• Associated GOLD sequencing projects: 69
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (95.283 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake (28.302 % of family members)
• Environment Ontology (ENVO): Unclassified (49.057 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline) (76.415 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 51.25%
  β-sheet: 0.00%
  Coil/Unstructured: 48.75%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF00149	Metallophos	20.75
PF02627	CMD	8.49
PF09825	BPL_N	7.55
PF13439	Glyco_transf_4	4.72
PF00268	Ribonuc_red_sm	2.83
PF00768	Peptidase_S11	2.83
PF12850	Metallophos_2	2.83
PF00004	AAA	1.89
PF00565	SNase	1.89
PF13240	zinc_ribbon_2	1.89
PF03721	UDPG_MGDP_dh_N	1.89
PF00535	Glycos_transf_2	1.89
PF00578	AhpC-TSA	1.89
PF04055	Radical_SAM	1.89
PF00733	Asn_synthase	0.94
PF12708	Pectate_lyase_3	0.94
PF03851	UvdE	0.94
PF01176	eIF-1a	0.94
PF00210	Ferritin	0.94
PF08883	DOPA_dioxygen	0.94
PF02675	AdoMet_dc	0.94
PF05488	PAAR_motif	0.94
PF13192	Thioredoxin_3	0.94
PF01521	Fe-S_biosyn	0.94
PF01165	Ribosomal_S21	0.94
PF00596	Aldolase_II	0.94
PF13759	2OG-FeII_Oxy_5	0.94
PF01569	PAP2	0.94
PF14240	YHYH	0.94
PF06941	NT5C	0.94
PF03401	TctC	0.94

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	8.49
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	8.49
COG0208	Ribonucleotide reductase beta subunit, ferritin-like domain	Nucleotide transport and metabolism [F]	2.83
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	2.83
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	1.89
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	1.89
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	1.89
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	1.89
COG1893	Ketopantoate reductase	Coenzyme transport and metabolism [H]	1.89
COG4841	Uncharacterized conserved protein YneR, related to HesB/YadR/YfhF family	Function unknown [S]	0.94
COG4502	5'(3')-deoxyribonucleotidase	Nucleotide transport and metabolism [F]	0.94
COG4294	UV DNA damage repair endonuclease	Replication, recombination and repair [L]	0.94
COG4104	Zn-binding Pro-Ala-Ala-Arg (PAAR) domain, involved in Type VI secretion	Intracellular trafficking, secretion, and vesicular transport [U]	0.94
COG3805	Aromatic ring-cleaving dioxygenase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.94
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.94
COG1586	S-adenosylmethionine decarboxylase	Amino acid transport and metabolism [E]	0.94
COG0828	Ribosomal protein S21	Translation, ribosomal structure and biogenesis [J]	0.94
COG0361	Translation initiation factor IF-1	Translation, ribosomal structure and biogenesis [J]	0.94
COG0316	Fe-S cluster assembly iron-binding protein IscA	Posttranslational modification, protein turnover, chaperones [O]	0.94

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.28 %
All Organisms	root	All Organisms	4.72 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.28 %
Viruses	superkingdom	All Organisms → Viruses	3.77 %
cellular organisms	root	All Organisms → cellular organisms	0.94 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.28 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	3.77 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.94 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.28 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	3.77 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.94 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.28 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	3.77 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.94 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.28 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3.77 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.94 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.28 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	3.77 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.94 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.28 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3.77 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.94 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300005077|Ga0071116_1004276	Not Available	17835
3300009155|Ga0114968_10005954	Not Available	9019
3300010354|Ga0129333_10003959	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	13893
3300013004|Ga0164293_10000005	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	168427
(restricted) 3300013131|Ga0172373_10001476	Not Available	38029
3300013285|Ga0136642_1002130	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	7917
3300020161|Ga0211726_11041567	Not Available	57831
(restricted) 3300027728|Ga0247836_1010808	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	8446
(restricted) 3300028044|Ga0247838_1016792	All Organisms → cellular organisms → Bacteria → Proteobacteria	5102

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.17%
Engineered	Engineered	1.89%
Host-Associated	Host-Associated	0.94%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	96.23%
Wastewater	Engineered → Wastewater	1.89%
Terrestrial	Environmental → Terrestrial	0.94%
Plants	Host-Associated → Plants	0.94%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	89.62%
Marine	Environmental → Aquatic → Marine	4.72%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	1.89%
Industrial Wastewater	Engineered → Wastewater → Industrial Wastewater	1.89%
Geologic	Environmental → Terrestrial → Geologic	0.94%
Leaf	Host-Associated → Plants → Leaf	0.94%

Type

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	48.11%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	15.09%
Lentic	Environmental → Aquatic → Freshwater → Lentic	12.26%
River	Environmental → Aquatic → Freshwater → River	8.49%
Lotic	Environmental → Aquatic → Freshwater → Lotic	4.72%
Coastal	Environmental → Aquatic → Marine → Coastal	3.77%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	1.89%
Petrochemical	Engineered → Wastewater → Industrial Wastewater → Petrochemical	1.89%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.94%
Unclassified	Environmental → Aquatic → Marine → Unclassified	0.94%
Mine	Environmental → Terrestrial → Geologic → Mine	0.94%
Unclassified	Host-Associated → Plants → Leaf → Unclassified	0.94%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	44.34%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	15.09%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	11.32%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	8.49%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	4.72%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	3.77%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	3.77%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	1.89%
Unclassified	Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified	1.89%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	0.94%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.94%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	0.94%
Unclassified	Environmental → Terrestrial → Geologic → Mine → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Leaf → Unclassified → Unclassified	0.94%

Habitat

Habitat	Taxonomy	Distribution
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	28.30%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	14.15%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	8.49%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	8.49%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	6.60%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	3.77%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	3.77%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	3.77%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	2.83%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	2.83%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	1.89%
Marine Plankton	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton	1.89%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	1.89%
Hydrocarbon Resource Environments	Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments	1.89%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	0.94%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment	0.94%
Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic	0.94%
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	0.94%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.94%
Coastal Lagoon	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Coastal Lagoon	0.94%
Sinkhole	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Sinkhole	0.94%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.94%
Mine Pit Pond	Environmental → Terrestrial → Geologic → Mine → Unclassified → Mine Pit Pond	0.94%
Estuary	Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary	0.94%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
2222084011	Coastal lagoon microbial communities from Albufera, Spain - Sample 1	Environmental
3300001605	Tailings pond microbial communities from Northern Alberta - Syncrude Mildred Lake Settling Basin	Engineered
3300001838	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM33, ROCA_DNA217_0.2um_bLM_C_2a	Environmental
3300001847	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM41. ROCA_DNA251_0.2um_TAP-D_2a	Environmental
3300002307	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-C2 co-culture F-D7	Environmental
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental
3300003277	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD	Environmental
3300004774	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA5M	Environmental
3300005077	Water filled karst sinkhole microbial communities from Little Salt Spring, North Port, Florida - Phototrophic mat 2014	Environmental
3300005527	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG	Environmental
3300005662	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)	Environmental
3300007212	Combined Assembly of cyanobacterial bloom in Punggol water reservoir, Singapore (Diel cycle-Bottom layer) 7 sequencing projects	Environmental
3300007609	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MG	Environmental
3300008055	Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393	Host-Associated
3300008107	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA	Environmental
3300008113	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA	Environmental
3300008114	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA	Environmental
3300008117	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NA	Environmental
3300009152	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG	Environmental
3300009155	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG	Environmental
3300009159	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG	Environmental
3300009163	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG	Environmental
3300009164	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG	Environmental
3300009180	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG	Environmental
3300009182	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG	Environmental
3300010158	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_MF_MetaG	Environmental
3300010334	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (v2)	Environmental
3300010354	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA	Environmental
3300010885	northern Canada Lakes Co-assembly	Environmental
3300011921	Mine pit pond microbial communities from Vermont, USA - 2M	Environmental
3300012352	Freshwater microbial communities from Baxter Creek, Ontario, Canada - S37	Environmental
3300012665	Freshwater microbial communities from Talbot River, Ontario, Canada - S11	Environmental
3300012990	Tailings pond microbial communities from Northern Alberta -TP6_2010 BML May 2015	Engineered
3300013004	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG	Environmental
3300013127 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 48cm	Environmental
3300013129 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 10cm	Environmental
3300013130 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment s2_kivu2a2	Environmental
3300013131 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10m	Environmental
3300013133 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment s1_kivu2a2	Environmental
3300013285	Freshwater microbial communities from Lower Cathedral Lake, Yosemite National Park, California, USA - 13028-31Y	Environmental
3300017788	Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L	Environmental
3300019784	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D	Environmental
3300020161	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1	Environmental
3300020573	Freshwater microbial communities from Lake Mendota, WI - 17JUL2012 deep hole epilimnion (SPAdes)	Environmental
3300021354	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L221-5m	Environmental
3300021963	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D	Environmental
3300024298	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atlam_RepC_8d	Environmental
3300024306	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepB_8h	Environmental
3300024481	Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepC_0h (Metagenome Metatranscriptome)	Environmental
3300024515	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_UVDOM_RepB_8d	Environmental
3300024867	Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepA_8h (Metagenome Metatranscriptome)	Environmental
3300025595	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA5M (SPAdes)	Environmental
3300026097	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MG (SPAdes)	Environmental
3300026459	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepA_8d	Environmental
3300026571	Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_UVDOM_RepB_8d (Metagenome Metatranscriptome)	Environmental
3300026572	Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepB_8h (Metagenome Metatranscriptome)	Environmental
3300027708	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)	Environmental
3300027728 (restricted)	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14m	Environmental
3300027736	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)	Environmental
3300027744	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN (SPAdes)	Environmental
3300027747	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (SPAdes)	Environmental
3300027754	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)	Environmental
3300027763	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)	Environmental
3300027782	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)	Environmental
3300027805	Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)	Environmental
3300027963	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)	Environmental
3300027969	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)	Environmental
3300027973	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)	Environmental
3300028044 (restricted)	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_15m	Environmental
3300028275	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepB_8d	Environmental
3300031758	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123	Environmental
3300031784	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112	Environmental
3300031857	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125	Environmental
3300031951	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120	Environmental
3300031963	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116	Environmental
3300032050	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122	Environmental
3300032093	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117	Environmental
3300032116	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119	Environmental
3300033996	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
2225154188	2222084011	Coastal Lagoon	MKQRKLLEQVYQACFDHDEKKLSELRKLEFQKIFKRRAEGKQVFTPKWTVVRV
Draft_100223768	3300001605	Hydrocarbon Resource Environments	MKQTKLLQKVYKACFDHDAEKLAELRKLEFQKILKRKAEGKPFNTKWTLVRV*
RCM33_10530122	3300001838	Marine Plankton	MKQRKLIKELYRACLDHDVTKIQELKQIEFQKILKRRAEGKPFXXXXXX*
RCM41_10522541	3300001847	Marine Plankton	MKQRKLIKELYRACLDHDVTKIQELRQIEFQKILKRRAEGKPFNTRWTTVRI*
JGI24890J29729_10197873	3300002307	Lentic	MKQRKLVTALYKACFDHDQAKQQELRVKEFAKIFKRKSEGKKFTAKWTVVH*
B570J40625_1001577414	3300002835	Freshwater	MRQKKLIAELYKACFDHDAKKMADLKKHEFQKILKRKAEGKHFTHRWTVVQI*
JGI25908J49247_100014652	3300003277	Freshwater Lake	MKQKKLLMELYKASFDHDAKKIAELREKEFRKIAKHKAEGKPFTAKWVLVRI*
Ga0007794_100011354	3300004774	Freshwater	MKQNKLVAKLYQACIAHDNEKIAELRKEEFRKIVKHKAEGKSFSAKWTTVRI*
Ga0071116_100427620	3300005077	Sinkhole	MKQKKLLQEVYKACFDHDAEKLAELRKQEFQKILKRRSEGKQFTPKWTIVRL*
Ga0068876_104161552	3300005527	Freshwater Lake	MRQKKLIAELYKACFDHDAKKMAELKKHEFQKILKRKAEGKHFTHRWTVVQI*
Ga0078894_100049524	3300005662	Freshwater Lake	MKQRKLVAKLYKACFDHDTETIAELRKKEFAKILKRKAEGKHFTTKWTIVQV*
Ga0078894_100601823	3300005662	Freshwater Lake	MRQKKLLKELYKACFDHDAEKIAELKKIEFAKIAKRRAEGRPFTNRWTVVQL*
Ga0078894_103668202	3300005662	Freshwater Lake	MKQKKLIAELYKACFDHDAKKMAELEKIEFQKILKRKAEGKHFTHRWTVVQI*
Ga0103958_10944102	3300007212	Freshwater Lake	MKQRKLLQEVYEACFDHDAEKLAKLRKMEFQKIFKRRAEGKQVFTPKWTVVRV*
Ga0102945_10032553	3300007609	Pond Water	MKQKKLVREMYKACIDHDREKIAELQQEEFRKIVKRKSEGKPFTPRWTVVRD*
Ga0108970_111534702	3300008055	Estuary	MKQRKLVRELFKACFDHDAKKMAELREKEFQKILKRKAEGRAFTTRWTVVQI*
Ga0114340_11989942	3300008107	Freshwater, Plankton	MKQKKLIAELYKACFDHDAKKMAELRQKEFQKILKRKAEGKHFTHRWTVVQI*
Ga0114346_12547732	3300008113	Freshwater, Plankton	MKQKKLIAELYKACFDHDAKKMAELRQKEFQKILKRKAEGKAFTHRWTVVQI*
Ga0114347_10182272	3300008114	Freshwater, Plankton	MKQKKLIAELYKACFDHDAKKMAELKKEEFQKILKRKAEGKHFTHRWTIVQI*
Ga0114351_12524883	3300008117	Freshwater, Plankton	MKQKKLIAELYKACFDHDAKKMAELKKLEFQKILKRKAEGKHFTHRWTVVQI*
Ga0114980_1000325912	3300009152	Freshwater Lake	MKQKKLVREVYRACLEHDVEKLAELRKEEFRKIFKRKAEGKAFNTRWTLVKI*
Ga0114968_100059548	3300009155	Freshwater Lake	MKQKKLLKELYQACFDHDAKKIEELRQEEFRKIAKHKAEGKSFTTKWTLVRI*
Ga0114968_100679613	3300009155	Freshwater Lake	MKQKKLLKELYKACFDHDAEKIAELKKLEFAKIAKRRAEGRPFNTRWTVVQI*
Ga0114968_102280761	3300009155	Freshwater Lake	MKQKKLLKELYKACFDHDAEKIAELKKHEFAKIAKRRAEGKPFNT
Ga0114978_100666034	3300009159	Freshwater Lake	MKQDKLVHKLYKACFDHDTETIAKLRKKEFAKILKRKAEGKHFTPKWTVVQV*
Ga0114978_104099242	3300009159	Freshwater Lake	MKQKKLLVELYKACFDHDAKKIADLRQKEFRKIAKHKAEGKPFTAKWTLVRI*
Ga0114970_100407603	3300009163	Freshwater Lake	MKQKKLVAELYRACFEHDVEKQQELYQIEMKKILKRKTTGKKFTPRWTVINT*
Ga0114975_1000006284	3300009164	Freshwater Lake	MKQKKLVMALYKACMEHDVEKQAQLRREEFAKIAKRKAEGKPFTPRWTVVNI*
Ga0114975_1000093215	3300009164	Freshwater Lake	MKQKKLVKELYQACFDHDAEKIAELKKIEFAKIAKRRAEGRPFTNRWTVVQL*
Ga0114975_100032482	3300009164	Freshwater Lake	MKQKKLLKELYKACFDHDVEKIAELRREEFAKIAKRKAEGKPFNTRWTVVQL*
Ga0114975_106009312	3300009164	Freshwater Lake	MKQKKLLKELYKACFDHDAEKIAELKKHEFAKIAKRRAEGKPFNTRWTVVQL*
Ga0114979_101212272	3300009180	Freshwater Lake	MKQKKLVMALYKACMEHDVEKQAQLRREEFAKIAKRKAEGKQFTPRWTVVNI*
Ga0114959_100330615	3300009182	Freshwater Lake	MKQNKLVARLYKACLAHDNEKIAELRKEEFRKIVKHKAEGKSFGAKWTTVRI*
Ga0114959_103757722	3300009182	Freshwater Lake	MKQAKLVREVYKACFDHDAKKIEELRQEEFRKIAKHKAEGKSFTAKWTLVRI*
Ga0114960_103928662	3300010158	Freshwater Lake	MKQKKLITELYKACFDHDAKKIEELRREEFRKIAKHKAEGKPFTAKWTLVRI*
Ga0136644_103679682	3300010334	Freshwater Lake	MKQKKLVTELYKACFDHDAKKIEELRREEFRKIAKHKAEGKPFTAKWTLVRI*
Ga0129333_1000395928	3300010354	Freshwater To Marine Saline Gradient	MKQKRLIAELYKACFDHDAKKMAELKRLEFQKILKRKAEGKHFTHRWTIVQI*
Ga0129333_101605582	3300010354	Freshwater To Marine Saline Gradient	MKQRKLVAKLYKACFDHDTETIAKLREKEFAKILKRKAEGKHFTTKWTIVQV*
Ga0129333_115889981	3300010354	Freshwater To Marine Saline Gradient	MKQKKLVMELYKACFDHDAKKIAELQKKEFRKIAKHKAEGKPFTAKWILVRI*
Ga0129333_116716042	3300010354	Freshwater To Marine Saline Gradient	MRQKKLVMELYKACFDHDAKKMAELKREEFQKILKRKAEGKHFTHRWTVVQI*
Ga0133913_1016986910	3300010885	Freshwater Lake	MKQKKLITELYKACFDHDAKKITELRQEEFRKIAKHKAEGKSFTHKWTLVRI*
Ga0133913_104216771	3300010885	Freshwater Lake	MKQKKLLVELYKACFDHDAKKIEELRREEFRKIAKHKAEGKSFSTKWT
Ga0120089_1004034	3300011921	Mine Pit Pond	MKQKKLIAELYRACFDHDAKKMAELRKEEFQKILKRKAEGKHFTHRWTVVQI*
Ga0157138_100052115	3300012352	Freshwater	MRQKKLLKELYKACFDHDAEKIAELKKLEFAKIAKRRAEGRPFTNRWTVVQL*
Ga0157210_100086615	3300012665	Freshwater	MKQKKLVMELYKACFDHDAKKIAELREKEFRKIAKHKAEGKSFTAKWIIVRV*
Ga0157210_10093012	3300012665	Freshwater	MKQKKLIAELYKACFDHDAKKMAELKKIEFQKILKRKAEGKHFTHRWTVVQI*
Ga0159060_10250472	3300012990	Hydrocarbon Resource Environments	MKQRKLLQEVYQACFDHDSEKLAKLRKLEFQKISKRRAEGKPFNTKWTLVRI*
Ga0164293_10000005117	3300013004	Freshwater	MKQNKLVMELYKACFDHDAKKIAELQKKEFRKIAKHKAEGKSFTAKWVLVRI*
(restricted) Ga0172365_105628422	3300013127	Sediment	MKQRKLIQEVYEACFTHDADKLKELRKEEFRKILKRRSEGKQVFSPKWTVIQV*
(restricted) Ga0172364_102982692	3300013129	Sediment	MKQRKLIQEVYEACFTNDADKLKELRKEEFRKILKRRSEGKQVFSPKWTVIQV*
(restricted) Ga0172363_102793843	3300013130	Sediment	MKQRKLIQEVYEACFDHDAEKLAKLRKMEFQKIFKRRAEGKQVFSPKWTLVRM*
(restricted) Ga0172373_1000147665	3300013131	Freshwater	MRQKKLIAELYQACFDHDAKKMAELRKEEFQKILKRKAEGKHFTHRWTVVQI*
(restricted) Ga0172362_101424063	3300013133	Sediment	MKQRKLIQEVYEACFTHDADKLKELRKEEFRKILKRRSEGNQVFSPKWTVIQV*
Ga0136642_10021304	3300013285	Freshwater	MKQKKLLKELYQACFDHDAKKIEELRQEEFRKIAKHKAEGKSFTAKWTLVRI*
Ga0169931_100345391	3300017788	Freshwater	VYEACFTHDADKLKELRKEEFRKILKRRSEGKQVFSPKWIVVRV
Ga0169931_102457201	3300017788	Freshwater	MKQRKLIQEVYEACFDHDAEKLAKLRKMEFQKIFKRRAEGKQVFSPKWTLVRM
Ga0169931_107398831	3300017788	Freshwater	QRKLIQEVYEACFTHDADKLKELRKEEFRKILKRRSEGKQVYTPKWTLVRI
Ga0169931_109697392	3300017788	Freshwater	YEACFTHDADKLKELRKEEFRKILKRRSEGKQVYSPKWTVVRV
Ga0181359_10533212	3300019784	Freshwater Lake	MKQKKLLMELYKASFDHDAKKIAELREKEFRKIAKHKAEGKPFTAKWVLVRI
Ga0211726_110415673	3300020161	Freshwater	MKQKKLITELYQACFDHNAKKMAELKKLEFQKILKRKAEGKHFTHRWTIVQI
Ga0208485_10752121	3300020573	Freshwater	MRQKKLIAELYKACFDHDAKKMADLKKHEFQKILKRKAEGKHFTHRWTVVQI
Ga0194047_1000015555	3300021354	Anoxic Zone Freshwater	MKQDKLIHKLYKACFEHNAEKQNELRKKEFSKILKRKAEGKPFTTKWTIVRI
Ga0222712_104815381	3300021963	Estuarine Water	MKQKKLIAELYKACFDHDAKKMAELKQIEFQKILKRKAEGKHFTHRWTVVQI
Ga0255178_11072342	3300024298	Freshwater	MKQKKLIAELYKACFDHDAKKMAELRKEEFQKILKRKAEGKHFTHRWTVVQI
Ga0255148_10545482	3300024306	Freshwater	MKQKKLIAELYQACFDHDAKKMAELKKIEFQKILKRKAEGKHFTHRWTVVQI
Ga0256330_10671772	3300024481	Freshwater	MKQKKLIAELYQACFDHDAKKMAELRKEEFQKILKRKAEGKHFTHRWTVVQI
Ga0255183_10000756	3300024515	Freshwater	MKQKKLIAELYKACFDHDAKKMAELKKIEFQKILKRKAEGKHFTHRWTVVQI
Ga0255267_10347263	3300024867	Freshwater	MKQKKLIAELYKACFDHDAKKMAELKQIEFQKILKRKAEAKHFTHRWTVVQI
Ga0208248_100044512	3300025595	Freshwater	MKQNKLVAKLYQACIAHDNEKIAELRKEEFRKIVKHKAEGKSFSAKWTTVRI
Ga0209953_10065572	3300026097	Pond Water	MKQKKLVREMYKACIDHDREKIAELQQEEFRKIVKRKSEGKPFTPRWTVVRD
Ga0255170_10117443	3300026459	Freshwater	MKQKKLIAELYQACFDHDAKKMAELRKEEFQKILKRKAEGKPFTHRWTVVQI
Ga0255289_11042791	3300026571	Freshwater	MKQKKLIAELYQACFDHDAKKMAELRKEEFQKILKRKAEGKHFTH
Ga0255270_10599802	3300026572	Freshwater	GKTMKQKKLIAELYKACFDHDAKKMAELKQIEFQKILKRKAEGKHFTHRWTVVQI
Ga0209188_10233275	3300027708	Freshwater Lake	MKQNKLVARLYKACLAHDNEKIAELRKEEFRKIVKHKAEGKSFGAKWTTVRI
Ga0209188_12846532	3300027708	Freshwater Lake	MKQAKLVREVYKACFDHDAKKIEELRQEEFRKIAKHKAEGKSFTAKWTLVRI
(restricted) Ga0247836_10108082	3300027728	Freshwater	MKQHQLVTELYKACFDHDAKKIAELKKLEFQKILKRKAEGKPFTHKWTVVQI
Ga0209190_100427817	3300027736	Freshwater Lake	MKQKKLVAELYRACFEHDVEKQQELYQIEMKKILKRKTTGKKFTPRWTVINT
Ga0209355_10920471	3300027744	Freshwater Lake	MKQKKLVTELYKACFDHDAKKIAELRQKEFHKIAKHKAEGKPFTAKWVLVRI
Ga0209189_11548862	3300027747	Freshwater Lake	MKQKKLITELYKACFDHDAKKIEELRREEFRKIAKHKAEGKPFTAKWTLVRI
Ga0209596_12591032	3300027754	Freshwater Lake	MKQKKLLKELYQACFDHDAKKIEELRQEEFRKIAKHKAEGKSFTTKWTLVRI
Ga0209088_100607192	3300027763	Freshwater Lake	MKQDKLVHKLYKACFDHDTETIAKLRKKEFAKILKRKAEGKHFTPKWTVVQV
Ga0209500_103083501	3300027782	Freshwater Lake	MKQKKLLVELYKACFDHDAKKIADLRQKEFRKIAKHKAEGKPFT
Ga0209229_103205812	3300027805	Freshwater And Sediment	MKQKKLIAELYKACFDHDAKKMAELKKEEFQKILKRKAEGKHFTHRWTIVQI
Ga0209400_10568503	3300027963	Freshwater Lake	MKQKKLLKELYKACFDHDAEKIAELKKLEFAKIAKRRAEGRPFNTRWTVVQI
Ga0209191_1000040148	3300027969	Freshwater Lake	MKQKKLVMALYKACMEHDVEKQAQLRREEFAKIAKRKAEGKPFTPRWTVVNI
Ga0209191_10017416	3300027969	Freshwater Lake	MKQKKLVKELYQACFDHDAEKIAELKKIEFAKIAKRRAEGRPFTNRWTVVQL
Ga0209191_100219225	3300027969	Freshwater Lake	MKQKKLLKELYKACFDHDVEKIAELRREEFAKIAKRKAEGKPFNTRWTVVQL
Ga0209298_100025981	3300027973	Freshwater Lake	MKQKKLVREVYRACLEHDVEKLAELRKEEFRKIFKRKAEGKAFNTRWTLVKI
(restricted) Ga0247838_10167924	3300028044	Freshwater	MKQHQLVSELYKACFDHDAKKIAELKKLEFQKILKRKAEGKPFTHKWTVVQI
Ga0255174_10464512	3300028275	Freshwater	KTMKQKKLIAELYQACFDHDAKKMAELRKEEFQKILKRKAEGKPFTHRWTVVQI
Ga0315907_101808142	3300031758	Freshwater	MKQKKLIAELYKACFDHDAKKMAELRQKEFQKILKRKAEGKHFTHRWTVVQI
Ga0315907_102835364	3300031758	Freshwater	MRQKKLIAELYKACFDHDAKKMAELKKHEFQKILKRKAEGKHFTHRWTVVQI
Ga0315899_105250663	3300031784	Freshwater	MRQKKLVMELYKACFDHDAKKMAELRKIEFEKILKRKAEGRAFTRRWTVVQI
Ga0315909_1003390410	3300031857	Freshwater	MKQKKLIAELYQACFDHDAKKMAELKKLEFQKILKRKAEGKHFTHRWTVVQI
Ga0315909_100728533	3300031857	Freshwater	MRQRKLVMELYKACFDHDAKKMAELRKIEFEKILKRKAEGRPFTNRWTVVQI
Ga0315909_101480133	3300031857	Freshwater	MKQKRLIAELYKACFDHDAKKMAELKRLEFQKILKRKAEGKHFTHRWTIVQI
Ga0315909_106451922	3300031857	Freshwater	MRQKKLVMELYKACFDHDAKKMAELKKKEFEKILKRKAEGRPFTNRWTVVQI
Ga0315909_108520112	3300031857	Freshwater	MKQKKLVAELYKACFDHDAKKMAELKKIEFQKILKRKAEGKHFTHRWTVVQI
Ga0315904_101108164	3300031951	Freshwater	ELYKACFDHDAKKMAELKKHEFQKILKRKAEGKHFTHRWTVVQI
Ga0315904_102716084	3300031951	Freshwater	MRQKKLIAELYKACFDHDAKKMAELKRLEFQKILKRKAEGKHFTHRWTIVQI
Ga0315904_109855142	3300031951	Freshwater	MRQRKLVMELYKACFDHDAKKMAELRKIEFEKILKRKAEGRPFTN
Ga0315901_109585462	3300031963	Freshwater	MKQKKLIAELYKACFDHDAKKMAELRQKEFQKILKRKAEGKHFTHRWTIVQI
Ga0315906_101824883	3300032050	Freshwater	MKQKKLIAELYKACFDHDAKKMAELKKLEFQKILKRKAEGKHFTHRWTIVQI
Ga0315902_106163932	3300032093	Freshwater	MKQKKLIAELYKACFDHDAKKMAELRQKEFQKILKRKAEGKAFTHRWTVVQI
Ga0315903_105084672	3300032116	Freshwater	IAELYKACFDHDAKKMAELKRLEFQKILKRKAEGKHFTHRWTIVQI
Ga0334979_0328704_565_723	3300033996	Freshwater	MKQNKLVMELYKACFDHDAKKIAELQKKEFRKIAKHKAEGKSFTAKWVLVRI