Scaffold Ga0071350_1045285

Overview

Basic Information

• Taxon OID: 3300005069
• Scaffold ID: Ga0071350_1045285
• Source Dataset Name: Metagenomes from Harmful Algal Blooms in Lake Erie, HABS-E2014-0024
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1672
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Fryxell, Antarctica
• Coordinates
  • Lat. (^o): -77.611214
  • Long. (^o): 163.119356

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F001562	Metagenome / Metatranscriptome	670	Y
F002598	Metagenome / Metatranscriptome	544	Y
F004840	Metagenome / Metatranscriptome	421	Y
F006744	Metagenome / Metatranscriptome	365	Y
F097310	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0071350_10452851	F001562	GGGGG	MNKSQFEKDLEIKESFIDLLNDIYPTVKIGYSTFTPAEILECCDPVAFAIGLVEHEDYLAELENE*
Ga0071350_10452852	F002598	AGAAGG	MATKLYTIESLLVGTNSRHFSGEIVSAEHRPEIYYGEKTEAYLIEVRAGGLRNKFATIAVKVGE*
Ga0071350_10452853	F000447	AGG	MGYIEIFRMDNEGAGWVDLSEATPDELFNIELGLLEEGAFE*
Ga0071350_10452854	F006744	AGG	MNLDEFKKHVLATREASRAEALSVLSATITTSTNERENLNG*
Ga0071350_10452855	F097310	GGA	MAKMKQLLDEIINCDLCNGKGWQFFGNATEYDVEACECNPNELEVNY*
Ga0071350_10452857	F004840	GGA	MYKITCAYDSNAPHWSAEYENEFGAWENFFLFTDWGMANEYSTVNIYTPTGKCYTKVFYRSGMVAVK*