Scaffold Ga0062387_101798523

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0062387_101798523

Scaffold Ga0062387_101798523

Overview

Basic Information
Taxon OID	3300004091 Open in IMG/M
Scaffold ID	Ga0062387_101798523 Open in IMG/M
Source Dataset Name	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	500
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location Name	Calvert Island, British Columbia, Canada
Coordinates	Lat. (^o)	51.62	Long. (^o)	-128.09	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F052123	Metagenome / Metatranscriptome	143	Y
F054288	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0062387_1017985231	F054288	N/A	SAREDSDPELVLQAADKALYRAKANGRNRVETATAPRRRTRIKAVGIA*
Ga0062387_1017985232	F052123	AGGGGG	VAPDDCPNCGGSGYVAKPVDMNGKSDGVAFIRLKCLACGGTGRKRPIPPSTAG*

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