Metagenome / Metatranscriptome Family F052123

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F052123
Family Type	Metagenome / Metatranscriptome
Number of Sequences	143
Average Sequence Length	53 residues
Representative Sequence	VAPDDCPNCGGSGYVAKPVDLNGKSEGVAFIRLKCPACGGTGRKRPIPPSTAG
Number of Associated Samples	123
Number of Associated Scaffolds	142

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	67.13 %
% of genes near scaffold ends (potentially truncated)	51.05 %
% of genes from short scaffolds (< 2000 bps)	67.13 %
Associated GOLD sequencing projects	118
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (65.035 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (12.587 % of family members)
Environment Ontology (ENVO)	Unclassified (26.573 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.140 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 3.70% β-sheet: 25.93% Coil/Unstructured: 70.37%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 142 Family Scaffolds
PF00990	GGDEF	35.92
PF01568	Molydop_binding	7.04
PF05336	rhaM	3.52
PF03928	HbpS-like	2.82
PF13411	MerR_1	2.82
PF00072	Response_reg	2.11
PF00486	Trans_reg_C	1.41
PF12728	HTH_17	1.41
PF04337	DUF480	0.70
PF13490	zf-HC2	0.70
PF08668	HDOD	0.70
PF13517	FG-GAP_3	0.70
PF00158	Sigma54_activat	0.70
PF14748	P5CR_dimer	0.70
PF02321	OEP	0.70
PF01553	Acyltransferase	0.70
PF08241	Methyltransf_11	0.70
PF08240	ADH_N	0.70
PF07690	MFS_1	0.70
PF08447	PAS_3	0.70
PF04185	Phosphoesterase	0.70
PF13360	PQQ_2	0.70
PF07992	Pyr_redox_2	0.70
PF02685	Glucokinase	0.70
PF02614	UxaC	0.70
PF01326	PPDK_N	0.70
PF09721	Exosortase_EpsH	0.70
PF01042	Ribonuc_L-PSP	0.70
PF03705	CheR_N	0.70
PF08281	Sigma70_r4_2	0.70
PF00196	GerE	0.70
PF01541	GIY-YIG	0.70
PF00106	adh_short	0.70
PF00033	Cytochrome_B	0.70

COG ID	Name	Functional Category	% Frequency in 142 Family Scaffolds
COG3254	L-rhamnose mutarotase	Cell wall/membrane/envelope biogenesis [M]	3.52
COG1352	Methylase of chemotaxis methyl-accepting proteins	Signal transduction mechanisms [T]	1.41
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.41
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.70
COG0574	Phosphoenolpyruvate synthase/pyruvate phosphate dikinase	Carbohydrate transport and metabolism [G]	0.70
COG0837	Glucokinase	Carbohydrate transport and metabolism [G]	0.70
COG1290	Cytochrome b subunit of the bc complex	Energy production and conversion [C]	0.70
COG1904	Glucuronate isomerase	Carbohydrate transport and metabolism [G]	0.70
COG3132	Uncharacterized conserved protein YceH, UPF0502 family	Function unknown [S]	0.70
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.70

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	66.43 %
Unclassified	root	N/A	33.57 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	66.43 %
Unclassified	root	N/A	33.57 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	65.03 %
Unclassified	root	N/A	33.57 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	1.40 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.57 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	31.47 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.59 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	1.40 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.70 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.57 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	11.19 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	7.69 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	3.50 %
unclassified Euryarchaeota	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota	1.40 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.70 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.70 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.19 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	7.69 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3.50 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1.40 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.70 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.70 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.19 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7.69 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1.40 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.70 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.70 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.70 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.19 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1.40 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.70 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.70 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.70 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.70 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.19 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1.40 %
Mycobacteroides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacteroides	0.70 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.70 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.70 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.70 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.19 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1.40 %
Mycobacteroides abscessus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacteroides → Mycobacteroides abscessus	0.70 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.70 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.70 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.70 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.19 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1.40 %
Mycobacteroides abscessus subsp. abscessus	subspecies	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacteroides → Mycobacteroides abscessus → Mycobacteroides abscessus subsp. abscessus	0.70 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.70 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.70 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.70 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.70 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000156\|NODE_c0739514	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	12347	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101853625	All Organisms → cellular organisms → Bacteria	1122	Open in IMG/M
3300001166\|JGI12694J13545_1012394	All Organisms → cellular organisms → Bacteria → Acidobacteria	891	Open in IMG/M
3300001471\|JGI12712J15308_10183288	Not Available	547	Open in IMG/M
3300002245\|JGIcombinedJ26739_101217445	Not Available	642	Open in IMG/M
3300002669\|Ga0005479J37267_101193	Not Available	521	Open in IMG/M
3300002907\|JGI25613J43889_10016741	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2051	Open in IMG/M
3300003505\|JGIcombinedJ51221_10006355	All Organisms → cellular organisms → Bacteria	3632	Open in IMG/M
3300003505\|JGIcombinedJ51221_10471528	Not Available	507	Open in IMG/M
3300004080\|Ga0062385_10018937	All Organisms → cellular organisms → Bacteria	2547	Open in IMG/M
3300004091\|Ga0062387_101798523	Not Available	500	Open in IMG/M
3300004104\|Ga0058891_1005689	Not Available	684	Open in IMG/M
3300004104\|Ga0058891_1006306	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	511	Open in IMG/M
3300004104\|Ga0058891_1018232	Not Available	558	Open in IMG/M
3300004114\|Ga0062593_100236984	All Organisms → cellular organisms → Bacteria → Acidobacteria	1493	Open in IMG/M
3300004121\|Ga0058882_1022571	All Organisms → cellular organisms → Bacteria → Acidobacteria	743	Open in IMG/M
3300004631\|Ga0058899_10104494	All Organisms → cellular organisms → Bacteria → Acidobacteria	850	Open in IMG/M
3300004635\|Ga0062388_102771193	Not Available	516	Open in IMG/M
3300005165\|Ga0066869_10100476	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	578	Open in IMG/M
3300005184\|Ga0066671_10391849	All Organisms → cellular organisms → Bacteria → Acidobacteria	888	Open in IMG/M
3300005336\|Ga0070680_100523661	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300005434\|Ga0070709_10032792	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3135	Open in IMG/M
3300005435\|Ga0070714_100168351	All Organisms → cellular organisms → Bacteria	1987	Open in IMG/M
3300005436\|Ga0070713_100000649	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	22243	Open in IMG/M
3300005445\|Ga0070708_100000435	All Organisms → cellular organisms → Bacteria	31161	Open in IMG/M
3300005445\|Ga0070708_100206501	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1840	Open in IMG/M
3300005445\|Ga0070708_100299051	All Organisms → cellular organisms → Bacteria → Proteobacteria	1515	Open in IMG/M
3300005458\|Ga0070681_11572793	Not Available	583	Open in IMG/M
3300005534\|Ga0070735_10000173	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	77516	Open in IMG/M
3300005534\|Ga0070735_10005504	All Organisms → cellular organisms → Bacteria	10485	Open in IMG/M
3300005535\|Ga0070684_102074422	Not Available	537	Open in IMG/M
3300005537\|Ga0070730_10204831	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1315	Open in IMG/M
3300005537\|Ga0070730_10475571	All Organisms → cellular organisms → Bacteria	803	Open in IMG/M
3300005541\|Ga0070733_10237399	All Organisms → cellular organisms → Bacteria	1197	Open in IMG/M
3300005541\|Ga0070733_10550380	Not Available	773	Open in IMG/M
3300005541\|Ga0070733_10712271	Not Available	674	Open in IMG/M
3300005542\|Ga0070732_10053045	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2345	Open in IMG/M
3300005553\|Ga0066695_10437007	Not Available	807	Open in IMG/M
3300005575\|Ga0066702_10005023	All Organisms → cellular organisms → Bacteria	5281	Open in IMG/M
3300005591\|Ga0070761_10599819	Not Available	685	Open in IMG/M
3300005602\|Ga0070762_10470148	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300005602\|Ga0070762_10894068	Not Available	605	Open in IMG/M
3300005610\|Ga0070763_10596758	Not Available	640	Open in IMG/M
3300005712\|Ga0070764_10273179	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	968	Open in IMG/M
3300005764\|Ga0066903_101884305	Not Available	1145	Open in IMG/M
3300005884\|Ga0075291_1006619	All Organisms → cellular organisms → Bacteria	1252	Open in IMG/M
3300005921\|Ga0070766_10091376	Not Available	1788	Open in IMG/M
3300005995\|Ga0066790_10521961	Not Available	508	Open in IMG/M
3300006031\|Ga0066651_10417344	All Organisms → cellular organisms → Bacteria → Acidobacteria	714	Open in IMG/M
3300006059\|Ga0075017_100000486	All Organisms → cellular organisms → Bacteria	22271	Open in IMG/M
3300006059\|Ga0075017_100651593	Not Available	808	Open in IMG/M
3300006162\|Ga0075030_101659516	Not Available	500	Open in IMG/M
3300006173\|Ga0070716_101355901	Not Available	577	Open in IMG/M
3300006174\|Ga0075014_100172042	All Organisms → cellular organisms → Bacteria	1074	Open in IMG/M
3300006174\|Ga0075014_100421296	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	732	Open in IMG/M
3300006176\|Ga0070765_100694787	All Organisms → cellular organisms → Bacteria	961	Open in IMG/M
3300006800\|Ga0066660_10509891	Not Available	1011	Open in IMG/M
3300006893\|Ga0073928_10000150	All Organisms → cellular organisms → Bacteria	162954	Open in IMG/M
3300006893\|Ga0073928_10574739	Not Available	799	Open in IMG/M
3300007258\|Ga0099793_10390446	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	683	Open in IMG/M
3300009522\|Ga0116218_1000007	All Organisms → cellular organisms → Bacteria	183521	Open in IMG/M
3300009646\|Ga0116132_1011838	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3427	Open in IMG/M
3300010361\|Ga0126378_11436261	All Organisms → cellular organisms → Bacteria	781	Open in IMG/M
3300011120\|Ga0150983_15843080	Not Available	510	Open in IMG/M
3300012096\|Ga0137389_10000416	All Organisms → cellular organisms → Bacteria	22959	Open in IMG/M
3300012350\|Ga0137372_10883265	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300013296\|Ga0157374_11917292	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	618	Open in IMG/M
3300013307\|Ga0157372_10449539	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1502	Open in IMG/M
3300014165\|Ga0181523_10071184	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2119	Open in IMG/M
3300014201\|Ga0181537_10155392	All Organisms → cellular organisms → Bacteria → Acidobacteria	1569	Open in IMG/M
3300014655\|Ga0181516_10188488	Not Available	1046	Open in IMG/M
3300014838\|Ga0182030_10054172	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6305	Open in IMG/M
3300017972\|Ga0187781_10216115	All Organisms → cellular organisms → Bacteria → Acidobacteria	1354	Open in IMG/M
3300017975\|Ga0187782_10349851	All Organisms → cellular organisms → Bacteria	1119	Open in IMG/M
3300017975\|Ga0187782_11556602	All Organisms → cellular organisms → Bacteria → Acidobacteria	521	Open in IMG/M
3300017996\|Ga0187891_1002651	All Organisms → cellular organisms → Bacteria	13371	Open in IMG/M
3300018034\|Ga0187863_10020458	All Organisms → cellular organisms → Bacteria	4047	Open in IMG/M
3300018042\|Ga0187871_10036228	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3055	Open in IMG/M
3300018090\|Ga0187770_10002846	All Organisms → cellular organisms → Bacteria → Proteobacteria	9800	Open in IMG/M
3300019275\|Ga0187798_1106008	All Organisms → cellular organisms → Bacteria → Acidobacteria	630	Open in IMG/M
3300019278\|Ga0187800_1283976	All Organisms → cellular organisms → Bacteria → Acidobacteria	543	Open in IMG/M
3300019278\|Ga0187800_1331522	Not Available	613	Open in IMG/M
3300019284\|Ga0187797_1768292	Not Available	598	Open in IMG/M
3300020580\|Ga0210403_10568137	All Organisms → cellular organisms → Bacteria → Acidobacteria	918	Open in IMG/M
3300020581\|Ga0210399_10067640	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2889	Open in IMG/M
3300020582\|Ga0210395_10283503	All Organisms → cellular organisms → Bacteria	1246	Open in IMG/M
3300021168\|Ga0210406_10403839	All Organisms → cellular organisms → Bacteria	1094	Open in IMG/M
3300021170\|Ga0210400_10007520	All Organisms → cellular organisms → Bacteria → Acidobacteria	9019	Open in IMG/M
3300021170\|Ga0210400_10052174	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3185	Open in IMG/M
3300021181\|Ga0210388_10018530	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5609	Open in IMG/M
3300021402\|Ga0210385_11440707	Not Available	526	Open in IMG/M
3300021478\|Ga0210402_10005232	All Organisms → cellular organisms → Bacteria	11673	Open in IMG/M
3300021478\|Ga0210402_11363990	Not Available	636	Open in IMG/M
3300022505\|Ga0242647_1007014	Not Available	935	Open in IMG/M
3300022557\|Ga0212123_10848576	Not Available	543	Open in IMG/M
3300022724\|Ga0242665_10194459	All Organisms → cellular organisms → Bacteria → Acidobacteria	665	Open in IMG/M
3300022726\|Ga0242654_10364759	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	547	Open in IMG/M
3300022726\|Ga0242654_10439029	Not Available	507	Open in IMG/M
3300022726\|Ga0242654_10439029	Not Available	507	Open in IMG/M
3300024295\|Ga0224556_1054784	Not Available	983	Open in IMG/M
3300025494\|Ga0207928_1000320	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	6656	Open in IMG/M
3300025914\|Ga0207671_10138997	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1870	Open in IMG/M
3300025929\|Ga0207664_10141004	All Organisms → cellular organisms → Bacteria	2039	Open in IMG/M
3300026529\|Ga0209806_1337740	Not Available	505	Open in IMG/M
3300026941\|Ga0207741_1026918	Not Available	604	Open in IMG/M
3300027011\|Ga0207740_1013959	All Organisms → cellular organisms → Bacteria → Acidobacteria	1137	Open in IMG/M
3300027330\|Ga0207777_1008780	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacteroides → Mycobacteroides abscessus → Mycobacteroides abscessus subsp. abscessus	2183	Open in IMG/M
3300027565\|Ga0209219_1000453	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6231	Open in IMG/M
3300027570\|Ga0208043_1005084	All Organisms → cellular organisms → Bacteria	4603	Open in IMG/M
3300027676\|Ga0209333_1004194	All Organisms → cellular organisms → Bacteria → Acidobacteria	5400	Open in IMG/M
3300027738\|Ga0208989_10006765	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3879	Open in IMG/M
3300027767\|Ga0209655_10003140	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5807	Open in IMG/M
3300027867\|Ga0209167_10010457	All Organisms → cellular organisms → Bacteria	4405	Open in IMG/M
3300027889\|Ga0209380_10617442	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	627	Open in IMG/M
3300027905\|Ga0209415_10089596	All Organisms → cellular organisms → Bacteria	3461	Open in IMG/M
3300028536\|Ga0137415_10574040	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	938	Open in IMG/M
3300028747\|Ga0302219_10016820	All Organisms → cellular organisms → Bacteria	2726	Open in IMG/M
3300028798\|Ga0302222_10244572	Not Available	700	Open in IMG/M
3300028800\|Ga0265338_10018138	All Organisms → cellular organisms → Bacteria	7550	Open in IMG/M
3300028800\|Ga0265338_10478124	Not Available	879	Open in IMG/M
3300029701\|Ga0222748_1104729	Not Available	555	Open in IMG/M
3300029922\|Ga0311363_10017016	All Organisms → cellular organisms → Bacteria → Acidobacteria	13111	Open in IMG/M
3300029953\|Ga0311343_10872472	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	723	Open in IMG/M
3300030524\|Ga0311357_10113489	All Organisms → cellular organisms → Bacteria	2705	Open in IMG/M
3300030596\|Ga0210278_1174825	Not Available	543	Open in IMG/M
3300030743\|Ga0265461_11802599	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	685	Open in IMG/M
3300030989\|Ga0308196_1064510	Not Available	532	Open in IMG/M
3300031094\|Ga0308199_1111922	Not Available	613	Open in IMG/M
3300031114\|Ga0308187_10417921	Not Available	534	Open in IMG/M
3300031226\|Ga0307497_10294068	All Organisms → cellular organisms → Bacteria	742	Open in IMG/M
3300031231\|Ga0170824_117404176	All Organisms → cellular organisms → Bacteria	2587	Open in IMG/M
3300031446\|Ga0170820_12707051	Not Available	693	Open in IMG/M
3300031590\|Ga0307483_1034209	Not Available	544	Open in IMG/M
3300031823\|Ga0307478_10088366	All Organisms → cellular organisms → Bacteria	2379	Open in IMG/M
3300032160\|Ga0311301_10152192	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4178	Open in IMG/M
3300032205\|Ga0307472_100571742	All Organisms → cellular organisms → Bacteria	991	Open in IMG/M
3300032782\|Ga0335082_10094851	All Organisms → cellular organisms → Bacteria	2968	Open in IMG/M
3300032805\|Ga0335078_10071143	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5083	Open in IMG/M
3300032828\|Ga0335080_10241421	Not Available	1976	Open in IMG/M
3300032897\|Ga0335071_11838872	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	549	Open in IMG/M
3300033134\|Ga0335073_10607917	All Organisms → cellular organisms → Bacteria → Acidobacteria	1219	Open in IMG/M
3300033824\|Ga0334840_011086	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3254	Open in IMG/M
3300033826\|Ga0334847_046233	Not Available	508	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.80%
Host-Associated	Host-Associated	3.50%
Engineered	Engineered	0.70%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.52%
Aquatic	Environmental → Aquatic	13.29%
Plants	Host-Associated → Plants	3.50%
Solid Waste	Engineered → Solid Waste	0.70%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	76.92%
Freshwater	Environmental → Aquatic → Freshwater	7.69%
Peat	Environmental → Terrestrial → Peat	5.59%
Sediment	Environmental → Aquatic → Sediment	3.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.50%
Thermal Springs	Environmental → Aquatic → Thermal Springs	2.10%
Grass	Engineered → Solid Waste → Grass	0.70%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.16%
Loam	Environmental → Terrestrial → Soil → Loam	26.57%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	11.19%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.69%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	5.59%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.50%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	2.10%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.10%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.40%
Composting	Engineered → Solid Waste → Grass → Composting	0.70%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	18.88%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.08%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	16.08%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.69%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	6.99%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.59%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	5.59%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.50%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	2.10%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.10%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.40%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.40%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.70%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.70%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.70%
Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor	0.70%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.59%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	10.49%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	6.29%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	5.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.20%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.50%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.50%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.80%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.80%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.80%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	2.80%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.80%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.10%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.10%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	2.10%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.10%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.10%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	2.10%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.10%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.40%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.40%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.40%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.70%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.70%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.70%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.70%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.70%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.70%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.70%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.70%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.70%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.70%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.70%
Sugar Cane Bagasse Incubating Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor → Sugar Cane Bagasse Incubating Bioreactor	0.70%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000156	Sugar cane bagasse incubating bioreactor microbial communities from Sao Carlos, Brazil, that are aerobic and semianaerobic	Engineered	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001166	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2	Environmental	Open in IMG/M
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002669	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF128 (Metagenome Metatranscriptome, Counting Only)	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004104	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF218 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004121	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF109 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005884	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_302	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009646	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_150	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014655	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_10_metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017996	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300019275	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019278	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019284	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022505	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024295	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 1-5	Environmental	Open in IMG/M
3300025494	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300026941	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 39 (SPAdes)	Environmental	Open in IMG/M
3300027011	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 29 (SPAdes)	Environmental	Open in IMG/M
3300027330	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 35 (SPAdes)	Environmental	Open in IMG/M
3300027565	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027570	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028747	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2	Environmental	Open in IMG/M
3300028798	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_2	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300029701	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029922	III_Fen_E1 coassembly	Environmental	Open in IMG/M
3300029953	II_Bog_E3 coassembly	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030596	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO135-VCO085SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030743	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assembly	Environmental	Open in IMG/M
3300030989	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_197 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031094	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031590	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033824	Peat soil microbial communities from Stordalen Mire, Sweden - 714 S2 5-9	Environmental	Open in IMG/M
3300033826	Peat soil microbial communities from Stordalen Mire, Sweden - 714 E2 1-5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
NODE_073951412	3300000156	Sugar Cane Bagasse Incubating Bioreactor	VAPDDCPQCGGSGYVTKAVEPNGKTEGVAFIRTKCPACGGTGRKRPISPETAG*
INPhiseqgaiiFebDRAFT_1018536251	3300000364	Soil	VAPEDCPKCGGSGYVAKPVDLNGKSEGVAFIRMKCPACGGTGRKRPISPTTAG*
JGI12694J13545_10123941	3300001166	Forest Soil	RCGGTGYIAQPVDISGKSEGIAFIRLKCPACVGSGRKSSVPPSAAG*
JGI12712J15308_101832882	3300001471	Forest Soil	LGPNDCPNCGGAGYIAKPVDLNGKSEGVAFIRAKCPACAGTGRNLTNPPSTAG*
JGIcombinedJ26739_1012174453	3300002245	Forest Soil	VDPKSCPHCGGTGYVARPVDIKGKSEGVAFIRLKCPTCAGSGRKA
Ga0005479J37267_1011931	3300002669	Forest Soil	GEGVAPEDCPNCGGSGYVAKPVDLNGKSEGVAFIRMKCPACGGTGWKRPISPTTAG*
JGI25613J43889_100167412	3300002907	Grasslands Soil	VDPKDCPRCGGTGYIARPVDISGKSDGVAFIRLNCPACAGSGRRKSIPPSTAG*
JGIcombinedJ51221_100063555	3300003505	Forest Soil	VDPKSCPRCGGTGYVAKPVDIKGKSEGVAFIRVKCPTCAGGERKTSVPPTTTG*
JGIcombinedJ51221_104715282	3300003505	Forest Soil	VAPDDCPNCGGSGFIAKPVDMNGKSDGVAFIRLKCPACAGTGRKRPIPPSTAG*
Ga0062385_100189371	3300004080	Bog Forest Soil	LSPDDCPNCGGSGYVAKPVDLNGKSEGVAFIRLKCPACAGTGRKRLIPPTAAG*
Ga0062387_1017985232	3300004091	Bog Forest Soil	VAPDDCPNCGGSGYVAKPVDMNGKSDGVAFIRLKCLACGGTGRKRPIPPSTAG*
Ga0058891_10056891	3300004104	Forest Soil	RLDENAHNSDGEEVGPNDCLTCGGSGFVAKPVDLNGKSEGVAFIRIKCPVCAGTGRKRLVPPKAAG*
Ga0058891_10063061	3300004104	Forest Soil	RVAPDDCPNCGGSGYVAKPVDLNGKSEGVAFIRLKCPACGGTGRKRPIPPSTAG*
Ga0058891_10182322	3300004104	Forest Soil	ATLRGRGLSPDDCPNCGGTGYVAKPVDLNGKSEGVAFIRSKCPVCAGTGRKHPIPPTAAG
Ga0062593_1002369842	3300004114	Soil	VAPDDCPKCGGSGYVAKPVELNGKTEGVAFIQIECPACGGTGRKRAISPETAG*
Ga0058882_10225712	3300004121	Forest Soil	PNNCPRCGGTGYVAKPVDIKGKSEGVAFIRLKCPTCAGSGRKNSASPTTAG*
Ga0058899_101044942	3300004631	Forest Soil	GGEGVAPEDCPNCGGSGYVAKPVDLNGKSEGVAFIRMKCPACGGTGRKRPISPTTAG*
Ga0062388_1027711931	3300004635	Bog Forest Soil	VVPDDCPNCGGSGFVAKPVDMNGKSDGIAFIRLKCPACAGTGRKRPNPPSTAG*
Ga0066869_101004762	3300005165	Soil	VAPDDCPNCGGSGYVAKPVDLNGKSEGVAFIRMKCPACAGTGRK
Ga0066671_103918492	3300005184	Soil	CPNCGGSGYVAKPVDLNGKSDGVAFIRLKCPACGGTGRKRTVPPTTAG*
Ga0070680_1005236612	3300005336	Corn Rhizosphere	VAPGDCPKCGGSGYVAKPVELNGKTEGIAFIQIKCPACGGTGRKRAISPKTAG*
Ga0070709_100327924	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	VAPDDCQTCGGSGYIAKPVDLNGKSDGVAFIRMKCPACGGSGRKRPISPTTAG*
Ga0070714_1001683513	3300005435	Agricultural Soil	CPNCGGSGYVAKPVDMNGKSEGVAFIRSKCPVCGGTGRKRIVSPKTAG*
Ga0070713_10000064918	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VAPDDCPNCGGSGYVAKPVDMNGKSEGVAFIRSKCPVCGGTGRKRIVSPKTAG*
Ga0070708_10000043525	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MDPESCPDCGGTGYVAKPVDINGKSEGIAFIRVKCPACGGSGRKRATPPNPAG*
Ga0070708_1002065012	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VAPDDCPNCGGSGYVAKPVDLNGKSDGVAFIRMKCPACGGTGRKRTIPPTTAG*
Ga0070708_1002990512	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MENLFNLGGSGVSPDDCPNCGGTGYVAKPVDLNGKSDGVAFIRMKCTVCAGTGRKRPIPPTTAG*
Ga0070681_115727931	3300005458	Corn Rhizosphere	MRGRGVAPDDCPKCGGSGYVAKPVELNGKTEGIAFIQIKCPACGGTGRKRAISPKTAG*
Ga0070735_1000017334	3300005534	Surface Soil	VDPEDCPTCGGSGYVAKPVDLNGKSEGVAFIRLKCPVCGGTGRKRSLSPTTAG*
Ga0070735_100055045	3300005534	Surface Soil	VAPDDCPNCGGSGYVAKPVDLNGKSEGVAFIRLKCPACGGTGRKRPIPPSTAG*
Ga0070684_1020744221	3300005535	Corn Rhizosphere	DCPKCGGSGYVAKPVELNGKTEGIAFIQIKCPACGGTGRKRAISPKTAG*
Ga0070730_102048312	3300005537	Surface Soil	MASTLRGIGVSPEDCPNCGGTGYVAKPVDLNGKSEGVAFIRLKCPACGGTGRKRTIPPTTAG*
Ga0070730_104755712	3300005537	Surface Soil	VDPEECPNCGGVGYVAKPVDYKGKSEGVAFIRVECSACGGTGRRQPISPTTAG*
Ga0070733_102373992	3300005541	Surface Soil	VSPDDCPNCGGSGYVAKPVDLNGKSEGVAFIRVKCPACGGSGRKRPSSPTAAG*
Ga0070733_105503802	3300005541	Surface Soil	LSPDDCPNCGGTGYVAKPVDLNGKSEGVAFIRSKCPVCAGTGRKHPIPPTAAG*
Ga0070733_107122711	3300005541	Surface Soil	MPSILGGRGVAPDDCPNCGGSGYIAKPVDLNGKSDGVAFIRLQCPACGGTGRKRTIPPTTAG*
Ga0070732_100530454	3300005542	Surface Soil	VDLADCPNCGGSGYITKPVDLNGKSDGVAFIRIKCPVCGGTGQTRNIPPTT
Ga0066695_104370071	3300005553	Soil	MDPESCPDCGGTGYLAKPVDIGGKSQGVAFIRVKCPACGGSGRKRATPPNPAG*
Ga0066702_100050231	3300005575	Soil	VAPEDCPNCGGSGYVAKPVDLNGKSDGVAFIRLKCPACGGTGRKRTVPPTTAG*
Ga0070761_105998191	3300005591	Soil	VTPKDCPRCGGTGYVAKPVDISGKSEGIAFIRTKCPACAGTGGKNSDPPSTAG*
Ga0070762_104701482	3300005602	Soil	LGPNDCPNCGGVGYIAKPVDLNGKSEGVAFIRAKCPACAGTGRNLNNPPSTAG*
Ga0070762_108940681	3300005602	Soil	GVDPKSCPRCGGTGYVARPVDIKGKSEGVAFIRLKCPTCAGSGRKASVPPTTAG*
Ga0070763_105967582	3300005610	Soil	LGPNDCPNCGGVGYIAKPVDLNGKSEGIAFIRAKCPACAGTGRNLTNPPSTAG*
Ga0070764_102731792	3300005712	Soil	VDPENCPTCGGSGYVEKPVDLNGKSEGVAFIRLKCPACNGNGRKRSISPTTAG*
Ga0066903_1018843051	3300005764	Tropical Forest Soil	VAPEDCASCGGTGYVAKPVDLNGKSEGVAFIRVKCPVCGGSGRIRTIPPTTA
Ga0075291_10066193	3300005884	Rice Paddy Soil	VAPEKCPKCGGSGYIAKPVELNGKKDGVAFIQSKCPTCRGTGRKRPIPPKAAG*
Ga0070766_100913764	3300005921	Soil	VTPDDCLNCGGSGYVTKPVDLNGKSDGVAFIRLQCPACGGTGRKRPIPPTTAG*
Ga0066790_105219612	3300005995	Soil	VAPEDCPHCGGTGYVAKPVDMNGQSEGIAFIRLKCPVCGGSGRKQPSLP
Ga0066651_104173441	3300006031	Soil	GGSGYVAKPVELNGKTEGIAFIQIKCPACGGTGRKRAISPETAG*
Ga0075017_1000004865	3300006059	Watersheds	VDSDDCSNCNGTGYVAKPVDLNGKAEGVAFIRLKCPVCGGTGRNRPIPPTAAG*
Ga0075017_1006515931	3300006059	Watersheds	VSPDNCPNCGGTGYIAKPVDLNGKSEGVAFIRLKCPACGGTGRKRSISPTA
Ga0075030_1016595162	3300006162	Watersheds	VTPDDCPNCGGTGYVAKPVDLNGKSEGVAFINLKCPVCAGTGRKHSIPPTT
Ga0070716_1013559011	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	VAPDDCPKCGGSGYVAKPVELNGKTEGVAFIQIKCPACGGTGRKRAISPETAG*
Ga0075014_1001720421	3300006174	Watersheds	VISDECPNCGGTGYIAKPVGLNGKSERVAFVRVKCAACEGTGRKRSIPPTTVG*
Ga0075014_1004212961	3300006174	Watersheds	VSPDECPNCGGTGYVAKPVDLNGKSEGVAFINLKCPVCAGTGRKRPIPPTAAG*
Ga0070765_1006947873	3300006176	Soil	VTPKDCPRCGGTGYIAKPVDISGKSEGVAFIRVKCPACAGSGRK
Ga0066660_105098911	3300006800	Soil	VAPDDCPNCGGSGYVAKPVDLNGKSEGIAFIRMKCPACGGTGRKRTIPPTTAG*
Ga0073928_1000015019	3300006893	Iron-Sulfur Acid Spring	VDPKDCPRCGGTGYIAQSVDVSGKSEGIAFIRVKCPACAGSGRNDSIPPSTAG*
Ga0073928_105747392	3300006893	Iron-Sulfur Acid Spring	MDPESCPKCGGTGYVAKPVDIGGKSEGIAFIRLKCPACEGSGRKRATPTNPAG*
Ga0099793_103904461	3300007258	Vadose Zone Soil	MGPESCPDCSGTGYVAKPVDVNGKSEGIAFIRVKCPACGGSGRKRATPPN
Ga0116218_100000762	3300009522	Peatlands Soil	VDPNNCPRCGGTGYIAQSVDVSGKSEGIAFIRVKCPACAGSGRNDSIPPTTAG*
Ga0116132_10118381	3300009646	Peatland	VDPKDCPRCGGTGYVAKPVDISGKSEGIAFIRVQCPACGGSGRKNSIP
Ga0126378_114362612	3300010361	Tropical Forest Soil	VAPDDCPNCGGSGYVAKPVDLNGKSEGVAFIRTKCPACGGSGRKR
Ga0150983_158430801	3300011120	Forest Soil	VDPNDCPRCGGTGYIARPVDISGKSDGVAFIRLKCPACAGSGRRKSIPPSTAG*
Ga0137389_1000041615	3300012096	Vadose Zone Soil	MENLFNLGGSGVSPDDCPNCGGTGYVAKPVDLNGKSDGVAFIRTKCTVCAGTGRKRPIPPTTAG*
Ga0137372_108832651	3300012350	Vadose Zone Soil	LDPDDCPTCGGSGYVAKPVDLNGKSEGVAFIRTKCPACGGTGRKRPISPKAAG
Ga0157374_119172922	3300013296	Miscanthus Rhizosphere	VAPGDCPKCGGSGYVAKPVELNGKTEGIAFIQIKCPACGGTGRKR
Ga0157372_104495392	3300013307	Corn Rhizosphere	MRGRGVAPDDCPKCGGSGYVAKPVELNGKTEGIAFIQIKCPACGGTGRKRAISPETAG*
Ga0181523_100711842	3300014165	Bog	VAPDDCPNCGGTGYVAKPVDLNGKSEGVAFIRLKCPACGGTGRKRPIPPSTAG*
Ga0181537_101553921	3300014201	Bog	VDPKSCPRCGGTGYVAKPVDIKGKSEGVAFIRTKCPTCAGSGRKTSVPPTT
Ga0181516_101884883	3300014655	Bog	VDPGNCPTCGGSGYVMKPVDLNGKSEGVAFIRLKCPACNGNGRKRSIS
Ga0182030_100541725	3300014838	Bog	VDPKNCPRCGGTGYIAQPVDISGKSEGIAFIRLKCPACAGSGRKSSIPPSTAG*
Ga0187781_102161151	3300017972	Tropical Peatland	RCGGTGYVAKPADISGKSEGVAFIRVKCPSCAGSGQKDSIPPSTAG
Ga0187782_103498512	3300017975	Tropical Peatland	VDPEDCPNCGGSGYVAKPVDLNGKSEGVAFIRTKCPACGGTGRKRPIPP
Ga0187782_115566022	3300017975	Tropical Peatland	VKPDDCPNCGGCGYVTKPVELNGRPDGVAFIRMTCPACKGSGRKHPISP
Ga0187891_100265110	3300017996	Peatland	VDPKDCPRCGGTGYVAKPVDISGKSEGIAFIRVQCPACAGSGRKNSIPPN
Ga0187863_100204585	3300018034	Peatland	VDPDDCPNCGGSGFVAKPVDMNGKSDGVAFIRLKCPACAGTGRKSPILPSTAG
Ga0187871_100362283	3300018042	Peatland	VDPKDCPRCGGTGYIAKPVDISGKSEGVAFIRQKCPACAGTGRK
Ga0187770_100028466	3300018090	Tropical Peatland	MIPCEFFLRVVENTPTTEGGGLSPDDCPNCGGTGYVAKPVDLNGKSEGIAFIRVKCPACAGSGRKLPTPPTTAG
Ga0187798_11060081	3300019275	Peatland	ERGVRPDNCPNCGGSGYVAKPVEMNGRSEGVAFIRVKCPNCEGSGRKLPSSPTAAG
Ga0187800_12839761	3300019278	Peatland	GERGVRPDKCPNCGGSGYVAKPVEMNGRSEGVAFIRVKCPNCEGSGRKLPSSPTAAG
Ga0187800_13315222	3300019278	Peatland	GEGVAPDDCPNCGGSGYVAKPVDLNGKSEGVAFIRMICPACAGTGRKRPISPTTAG
Ga0187797_17682921	3300019284	Peatland	GVKPDDCPNCGGCGYVTKPVDLNGRPDGVAFIRMTCPACKGSGRKHPISPKTAG
Ga0210403_105681372	3300020580	Soil	RKTQSRGFRPRLDENAHNSEGEEVGPNDCLTCGGSGFVAKPVDLNGKSEGVAFIRIKCPVCAGTGRKRLVPPKAAG
Ga0210399_100676402	3300020581	Soil	MDPESCPDCGGTGYLAKPVDINGKSQGVAFIRVKCPACGGSGRKRATPPNPAG
Ga0210395_102835033	3300020582	Soil	VAPDDCPNCGGSGYVAKPVDLNGKSEGVAFIRLKCPACGGTGRKRPIPPSTAG
Ga0210406_104038393	3300021168	Soil	VAPEDCPNCGGSGYVAKPVDLNGKSEGVAFIRMKCPACGGTGRKRPI
Ga0210400_100075203	3300021170	Soil	VDNAINSEGGKGVAPDDCSNCGGSGYVAKPVDLNGKVDGVAFIRSKCPVCGGTGRKLTIPPTTAG
Ga0210400_100521741	3300021170	Soil	VGPNDCLTCGGSGFVAKPVDLNGKSEGVAFIRIKCPVCAGTGRKRL
Ga0210388_100185305	3300021181	Soil	MDPNSCPRCGGTGYVARPVDIKGESEGVAFIRLKCPTCAGSGRKKSASPTTAG
Ga0210385_114407071	3300021402	Soil	VDPENCPTCGGSGYVEKPVDLNGKSEGVAFIRLKCPACNGNGRKRSVSPTT
Ga0210402_100052323	3300021478	Soil	VAPDDCPNCGGSGYVAKPVDLNGKSEGVAFIRINCPACGGTGRKRTIPPTTAG
Ga0210402_113639901	3300021478	Soil	VAPDDCPNCGGSGYVAKPVDLNGKSEGVAFIRLKCPACGGTGRKRPIP
Ga0242647_10070141	3300022505	Soil	VTGATAKCGGQQLVAKPVDSNGKSEGVAFIRFECPVCGGTGRKHPFPPS
Ga0212123_108485762	3300022557	Iron-Sulfur Acid Spring	VAPEDCPSCGGTGYVAKPVDLNGKSEGIAFIRSKCPACGGSGRKHPIP
Ga0242665_101944591	3300022724	Soil	IAVFMGLYLRYWRPGKVLAPDDCPNCGGSGYVAKPVDLNGKSEGVAFIRLKCPACGGTGRKRPIPPSTAG
Ga0242654_103647591	3300022726	Soil	KGVAPDDCSNCGGSGYVAKPVDLNGKVDGVAFIRSKCPVCGGTGRKLTIPPTTAG
Ga0242654_104390291	3300022726	Soil	DADILRAYNLHGLSPDDCPNCGGTGYVAKPVDLNGKSEGVAFIRSKCPVCAGTGRKHPIPPTAAG
Ga0242654_104390292	3300022726	Soil	DADILRAYNLHGLSPDDCPNCGGTGYVAKPVDLNGKSEGVAFIRLKCSACAGTGRKRPIPPTAAG
Ga0224556_10547841	3300024295	Soil	LDPKDCPRCGGAGYIARPVDISGKSQGVAFIRLKCPACEGSGRNNSIPP
Ga0207928_10003204	3300025494	Arctic Peat Soil	VAPDDCPKCGGSGFVAKPVDLNGKSEGVAFIRLRCPACGGTGRKRPILPSTAG
Ga0207671_101389972	3300025914	Corn Rhizosphere	MRGRGVAPDDCPKCGGSGYVAKPVELNGKTEGIAFIQIKCPACGGTGRKRAISPETAG
Ga0207664_101410041	3300025929	Agricultural Soil	APDDCPNCGGSGYVAKPVDMNGKSEGVAFIRSKCPVCGGTGRKRIVSPKTAG
Ga0209806_13377401	3300026529	Soil	GDCPKCGGSGYVAKPVELNGKTEGIAFIQIKCPACGGTGRKRAISPETAG
Ga0207741_10269182	3300026941	Tropical Forest Soil	VNPDDCPTCGGTGYVAKPVDLNGKSEGVAFIRLKCTVCGGTGRKR
Ga0207740_10139591	3300027011	Tropical Forest Soil	GTGYVAKPVDLNGKSEGVAFIRLKCTVCGGTGRKRPIPPTTVG
Ga0207777_10087802	3300027330	Tropical Forest Soil	VNPDDCPTCGGTGYVAKPVDLNGKSEGVAFIRLKCTVCGGTGRKRPIPPTTVG
Ga0209219_10004533	3300027565	Forest Soil	MDPESCPDCGGTGYVAKPVDVNGKSEGIAFIRVKCPACGGSGRKRATPTNPAG
Ga0208043_10050842	3300027570	Peatlands Soil	VDPNNCPRCGGTGYIAQSVDVSGKSEGIAFIRVKCPACAGSGRNDSIPPTTAG
Ga0209333_10041943	3300027676	Forest Soil	VDPKDCPRCGGTGYIAQPVDISGKSEGIAFIRVKCPACVGSGRKSSIPPSTAG
Ga0208989_100067654	3300027738	Forest Soil	MVLGAFRQFIVENLPNRGGRGVSPNDCPSCGGTGYVAKPLDMNGKSDGVAFIRLKCAECAGTGRKLPPPPPIAG
Ga0209655_100031405	3300027767	Bog Forest Soil	VDPKDCPRCGGTGFVAKPVDISGKSDGVAFIRVKCPACAGSGRKSSIPPSTAG
Ga0209167_100104572	3300027867	Surface Soil	VNSDNCPNCGGSGYVARPVELNGKSDGVAFIRMKCPICAGSGKKRPIPPTTVG
Ga0209380_106174421	3300027889	Soil	VAPDDCPNCGGSGFIAKPVDMNGKSDGVAFIRLKCPACAGTGRKRPIPP
Ga0209415_100895963	3300027905	Peatlands Soil	MDPKNCPRCGGTGYVARPVDIKGKSEGVAFIRLKCPSCAGSGRKSSVPPTTAG
Ga0137415_105740402	3300028536	Vadose Zone Soil	VDPKDCPRCGGTGYIARPVDISGKSDGVAFIRLKCPACAGSGRDGLAGISAIR
Ga0302219_100168202	3300028747	Palsa	VAPDDCPNCGGSGYVAKPVDMNGKSDGVAFIRLKCPACAGTGRKSPILPSTAG
Ga0302222_102445721	3300028798	Palsa	VDPQDCPRCGGTGYLARPVDISGKSEGVAFIRVKCPACAGSGRKSSIPP
Ga0265338_100181386	3300028800	Rhizosphere	VAPDDCPNCGGTGYVAKPVDLNGKSEGVAFIRLKCPACGGTGRKRPISPSTAG
Ga0265338_104781241	3300028800	Rhizosphere	VAPNDCPSCGGSGYVAKPVDLNGKSEGVAFIRLQCPACGGTGRKRP
Ga0222748_11047291	3300029701	Soil	GNSEGGKGVAPDDCSNCGGSGYVAKPVDLNGKVDGVAFIRSKCPVCGGTGRKLTIPPTTA
Ga0311363_100170167	3300029922	Fen	VDPKNCPRCGGTGYIAQPVDISGKSEGIAFIRLKCPACAGSGRKSSIPPSTAG
Ga0311343_108724721	3300029953	Bog	VDPNDCPRCGGTGYIARPVDIRGTSEGVAFIRLKCPACAGSGRNNSIPPSTAG
Ga0311357_101134891	3300030524	Palsa	VAPDDCPNCGGSGYVAKPVDMNGKSDGVAFIRLKCPACAGTGRKSPILPST
Ga0210278_11748251	3300030596	Soil	LSPDDCPICGGTGYVAKPVDLNGKSEGVAFIRSKCPACAGTGRKHPVPPTAAG
Ga0265461_118025991	3300030743	Soil	PAVEGGRGVAPEDCPSCGGTGYVAKPVDLNGKSEGVAFIRLKCPVCAGTGRKRSIPPSTA
Ga0308196_10645102	3300030989	Soil	GEAVHPDKCPNCVGTGYIAKPVDLNGKSEGVAFIRMKCPVCLGTGRKRPIPPATAG
Ga0308199_11119222	3300031094	Soil	FNLRGEAVHPDKCPNCGGTGYIAKPVDLNGKSEGVAFIRMKCPVCLGTGRKRPIPPATAG
Ga0308187_104179212	3300031114	Soil	GEAVHPDKCPNCGGAGYIAKPVDLNGKSEGVAFIRMKCPVCLGTGRKRPIPPATAG
Ga0307497_102940681	3300031226	Soil	LAPDDCPNCGGSGYVAKPVDLNGKSDGVAFIRMKCPACGGSGRKRPISPTTAG
Ga0170824_1174041762	3300031231	Forest Soil	VAPDDCPNCGGSGYVAKPVDMNGKSEGVAFIRSKCPVCGGTGRKRIVSPKTAG
Ga0170820_127070512	3300031446	Forest Soil	GGKGVAPDDCPNCGGSGYVAKPVDLNGKADGVAFIRSKCPVCGGTGRKLTIPPTTAG
Ga0307483_10342091	3300031590	Hardwood Forest Soil	EGVAPEDCPNCGGSGYVAKPVDLNGKSEGVAFIRMKCPACGGTGRKRPISPTTAG
Ga0307478_100883662	3300031823	Hardwood Forest Soil	MMASKDCPRCGGTGFIAKPADINGKSEGIAFIRLKCPGCAGTGRIDPNPPSATG
Ga0311301_101521924	3300032160	Peatlands Soil	VAPDDCPNCGGTGYVAKPVDLNGKSEGVAFIRLKCPACGGTGRKRPIPPSTAG
Ga0307472_1005717421	3300032205	Hardwood Forest Soil	VAPEDCPNCGGSGYVAKPVDLNGKSEGVAFIRMKCPACGGTGRKRPISPT
Ga0335082_100948514	3300032782	Soil	VAPDDCPNCGGSGYVAKPVDLNGKSDGVAFIRTKCPACGGSGRKRPISPTAAG
Ga0335078_100711437	3300032805	Soil	VDPEDCPTCGGSGYVTKPVDLNGKSEGVAFIRLKCPVCGGTGRKRSISPTTAG
Ga0335080_102414211	3300032828	Soil	VSPDDCPNCGGTGYVAKPVDLNGKSEGVAFIRLKCPVCAGTGRNRPVPP
Ga0335071_118388721	3300032897	Soil	VAPEDCPNCGGSGFVAKPVDLNGKSDGVAFIRMKCPACGGSGRKRPISP
Ga0335073_106079172	3300033134	Soil	CPNCGGTGYVAKPVDLNGKSEGVAFIRLKCPVCGGSGRKHIISPTAAG
Ga0334840_011086_162_323	3300033824	Soil	MDPKNCPRCGGTGYIAQPVDISGKSEGIAFIRLKCPACAGSGRKSSIPPSTAG
Ga0334847_046233_1_138	3300033826	Soil	MSPDDCPNCGGTGYVAKPVDLNGKSEGVAFIRLQCPICAGTGRKHP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F052123

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences