Scaffold JGI25926J51410_1026135

Overview

Basic Information

• Taxon OID: 3300003490
• Scaffold ID: JGI25926J51410_1026135
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1108
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F001562	Metagenome / Metatranscriptome	670	Y
F002598	Metagenome / Metatranscriptome	544	Y
F006744	Metagenome / Metatranscriptome	365	Y
F101047	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25926J51410_10261351	F001562	N/A	KDSFIDLLNDVYPSVKIGYSTFTPAEILECCDPVAFSIGLIEHEDYLAELEDET*
JGI25926J51410_10261353	F002598	AGAAGG	MATKLYTIENLLIGKNYRSNXRHFSGXIXSAEHRPEIWYGEKTEAXLIEINAGGLRNKFATIAVKVGE*
JGI25926J51410_10261354	F000447	AGG	MGYIEIFRMDNEGAGWVDLAEATPDELFNIELGLLEEGAFE*
JGI25926J51410_10261355	F006744	AGG	MNLDEFKKHVLATRQASKAEALSVLSATITIQPNERENLNG*
JGI25926J51410_10261356	F101047	GGA	MGKMKELYTQILECETCYGTGWLYYGDENNYDVEACQCNPLSFFQENK*