Scaffold draft_100594

Overview

Basic Information

• Taxon OID: 3300003437
• Scaffold ID: draft_100594
• Source Dataset Name: Marine microbial communities from the San Pedro channel, Pacific Ocean in the San Pedro Ocean Time-series (SPOT) study- Sample 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11815
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (52.94%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The San Pedro Channel, Pacific Ocean In The San Pedro Ocean Time-Series (Spot) Study

Source Dataset Sampling Location

• Location Name: San Pedro Channel, Pacific
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.42
  • Depth (m): 890

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000615	Metagenome / Metatranscriptome	984	Y
F084346	Metagenome / Metatranscriptome	112	Y
F099439	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
draft_1005942	F000615	GAG	VTRNQNNIVSGLERPVNIMCRIRTFYECSDGTMGFAEMVVSYEEDIAGLIRHWGTGGRMVITEHVEMTV*
draft_1005944	F084346	AGAAGG	MTFHTIHPRYQVETSKEQSMLSSKQQAEDIYQKYVNQKIPCELFLNGQLQKEFKPL*
draft_1005946	F099439	AGGAG	MKTFEVDYETTIPPWRFGHEEIEAEDLATAKKKFCSKHEAARLLKVYMVNTDTLAK*