Sample 3300003437

Basic Information
IMG/M Taxon OID	3300003437 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111419 \| Gp0104110 \| Ga0059306
Sample Name	Marine microbial communities from the San Pedro channel, Pacific Ocean in the San Pedro Ocean Time-series (SPOT) study- Sample 1
Sequencing Status	Permanent Draft
Sequencing Center
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Marine microbial communities from the San Pedro channel, Pacific Ocean in the San Pedro Ocean Time-series (SPOT) study- Sample 1

Sequencing Status

Permanent Draft

Sequencing Center

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	15266207
Sequencing Scaffolds	10
Novel Protein Genes	31
Associated Families	31

Dataset Contents

Total Genome Size

15266207

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → environmental samples → uncultured marine virus	1
Not Available	8
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → environmental samples → uncultured marine virus

Not Available

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From The San Pedro Channel, Pacific Ocean In The San Pedro Ocean Time-Series (Spot) Study
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The San Pedro Channel, Pacific Ocean In The San Pedro Ocean Time-Series (Spot) Study

Ecosystem Assignment (GOLD)

Name

Marine Microbial Communities From The San Pedro Channel, Pacific Ocean In The San Pedro Ocean Time-Series (Spot) Study

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The San Pedro Channel, Pacific Ocean In The San Pedro Ocean Time-Series (Spot) Study

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine photic zone → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → marine photic zone → sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	San Pedro Channel, Pacific
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.42	Alt. (m)	N/A	Depth (m)	890
Location on Map

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Location Information

Location

San Pedro Channel, Pacific

Coordinates

Lat. (^o)

33.55

Long. (^o)

-118.42

Alt. (m)

N/A

Depth (m)

890

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F000615	Metagenome / Metatranscriptome	984	Y
F001048	Metagenome / Metatranscriptome	793	Y
F002310	Metagenome / Metatranscriptome	572	Y
F002715	Metagenome / Metatranscriptome	535	Y
F003411	Metagenome / Metatranscriptome	488	Y
F004643	Metagenome / Metatranscriptome	429	Y
F005069	Metagenome / Metatranscriptome	413	Y
F005608	Metagenome / Metatranscriptome	395	Y
F006146	Metagenome / Metatranscriptome	380	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
draft_100036	All Organisms → Viruses → environmental samples → uncultured marine virus	41800	Open in IMG/M
draft_100041	Not Available	40519	Open in IMG/M
draft_100177	Not Available	21047	Open in IMG/M
draft_100234	Not Available	18735	Open in IMG/M
draft_100250	Not Available	18147	Open in IMG/M
draft_100339	Not Available	15381	Open in IMG/M
draft_100594	Not Available	11815	Open in IMG/M
draft_100611	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	11684	Open in IMG/M
draft_100628	Not Available	11540	Open in IMG/M
draft_100655	Not Available	11401	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
draft_100036	draft_1000367	F002310	MNELIVNADGTVTVVGDAGSVSGIIAEAVEAATIPAEYGEDGVETKAAIVPDADTLMVEISAEDLKTHAWRLPKARAERLEEIRGDRNGGLKELDLEYQLADEGVHPTGLDKAAVAAKKAALRDLPVAAQAALDAMDNTDDMEAYQPRELV*
draft_100041	draft_10004114	F075314	MAEENKWKEAELRRDDIKKLLENTKKLAGMYSEIMEVKRESWEAVLRAKIKKAEKEKQNG
draft_100041	draft_10004116	F011406	MALIKATLFSELLQTFSAHSPDPMKPGKDIAKSFANYLKMGMNAGGFPTTNVIDAPTGMTIGQVFASQLPAGAAIGSQIASALTSMAATYLSTNQIGPPVVTPSHTPQLIQLFSAPQASGMSFAKELADVLDTWTKTWVVSGLIPGAPPIPFSGPLS*
draft_100041	draft_10004127	F034216	MSKESNLFGFLFCALLVIWAASSWGDPDLIDALIYYLSDGYYK*
draft_100177	draft_10017710	F003411	MYLIESLESETEAFEQLAEDAAKKESRYKGSWAKEYLSAKGSIKERESWADYKLADTQFDFKCAEALVKAKREKLLSLRTSIDAMRTLNANVRFQVGP*
draft_100234	draft_10023410	F010791	MSFEFRAGRKRVVKSVETVEEANKLMRKMIKIRNENSLWENIDVKTGHLRAVDELEKVMGAIFDVYETMSIYVNGKSVRKIWKRGF*
draft_100234	draft_10023412	F105339	MMKIDLTGTHEENMTAINNAEISEEFKAHIRKDLQEQVDRCLSSCFGVDLDIEHEKNSIPIHELVPKGMTIKEYFGND*
draft_100234	draft_10023424	F005608	MKTTKIEILEEGEFIFGSPTVGKYMVRRYEDEVEMGGGFFKTKKEALTHAREYKKDK*
draft_100234	draft_10023425	F028833	MNNLTYLWSDGMVDSIAKKVAEEPMENVDDLPQHIIDEERGDAIRQWRKEQAQMEMFDDPYLNWSGLR*
draft_100234	draft_10023427	F041248	MSPQKRARQEGAIERTQASILVYKEKLKSCEDDTEKKLLKKKIERAKTTIENTKIRK*
draft_100234	draft_10023429	F025300	MKKINVETLVPDTFKFLARDMDGKLYAFENEPSVAIDIACDNWDVKEGKFLQITNPVFLSAEGITHTGIDSVLGDWRDSLTEINNENVA*
draft_100250	draft_10025011	F042933	MVVEVVERDINGLEFTYENKDELVFEPNPNQLEPIEDEVND*
draft_100250	draft_1002502	F015654	MKRFFKEVYITGHSKEDKNTFDTFKDTKFYKVIDISTSKEVFELAEEVEELEDCDNVEYITFDEIRI*
draft_100250	draft_10025020	F013358	MSVRPKSVCDSCSATYIIVHELPEDMYTEQYCPFCGEEHEDIEEDVLLNEDWD*
draft_100339	draft_10033912	F002715	MPEHELQSVKLEVGLLKNEVEVRGRQIETLLQKLDLTTDKLQQLTVQIIQLNTRQEDYLRHSTSMTDEFKILHTRIGDLHDKQLAAQKDIEQRLDRLDQYKSKLMGMIIVVGGVVGTIVATTISVFLKD*
draft_100339	draft_10033914	F000245	MKTFTRFKESKLDDKLDKLVSNEIKKRKLAKFPVNATDDIKMRMKPNKPVFKFPSPNSDMMIHVYLRKMTPPSKKGMMAFNYQLEDK*
draft_100339	draft_10033915	F006919	MKSFIQHLKEFASYSTSDLVFMNNGQGSASSGLMIPLSGPMFKRIWPDTIRTTVFHTTDLSGLEKLKRLEGGKKTISAFFSMMSRYMEGGIASGGGIVVEMDADVLVSASDDIMSQVDNKGRRWVEMSWFANAQRYGTGPKFAVVERELNDLIRDLVVKHLEPIIGNRARTEQEFYLWGDMKKQLKGDGRKIAAVIKDYFDGVEKVIKKNSEVMGNIFYGYAKSKRQTEQAWDEQIVNNIEITKVHIIDFTTKAPSLQGQFDASKDLAKKNSWPMKVWDATETMDLEVYTRQVAQAEVRTR*
draft_100339	draft_1003394	F052651	MDINKEYFNDKSEAEKLRNVSSLVDSIVNAEPVEELKVDSGVGEGDGTEKLEVPEIDPLVDLVGKAISKGKPKGFFMQGVQSDDHPKL*
draft_100339	draft_1003395	F017718	MTTQNYDSSLDLVNDRLKQIDDIMEKFSGFPEVQQKLQGARDALVESEEEIMTYYDLTSIEKYNKT*
draft_100594	draft_1005942	F000615	VTRNQNNIVSGLERPVNIMCRIRTFYECSDGTMGFAEMVVSYEEDIAGLIRHWGTGGRMVITEHVEMTV*
draft_100594	draft_1005944	F084346	MTFHTIHPRYQVETSKEQSMLSSKQQAEDIYQKYVNQKIPCELFLNGQLQKEFKPL*
draft_100594	draft_1005946	F099439	MKTFEVDYETTIPPWRFGHEEIEAEDLATAKKKFCSKHEAARLLKVYMVNTDTLAK*
draft_100611	draft_1006117	F063768	MDMEAVQDPLTTAEGVAEFVVLAELSRALSERLAGWSVDGAGPGSSATMASLASRLDEHSTWWTERIPESVLLEGERTAASGSGRLVEVLDLLDVPASDRNAAVVPVLDRLVAYLGALAERLSPLGDAPALRTIRLVLADLVDRPR*
draft_100628	draft_10062812	F006146	MIITTTTMIIVQVIVVGCIMWTTPEPCPRKYRVTQDKGGELAHASDIFRYCTLDYGGKFILKEE*
draft_100628	draft_10062814	F042386	MNNAGLTTRYEEGDNGQFELFKDNASYMKEDDRDGIPKFFTLEHIEKRLGGLGEY*
draft_100628	draft_10062819	F055786	MICSNCYTSHIKPKHDVGHWWNNPLDSVYVCSDKCYTELEKLVKNRTWMDYKPVAIFGKKKKVEKKKTIEAITDKQFTDNL*
draft_100628	draft_10062820	F001048	MKIKSKKQFWWRLNHLKRNGGEITITDRTPEMDVKEFNRIELLVNKRVRWEIGSEGMAIWNVCGYKDIPTLAKAYGIK*
draft_100628	draft_1006285	F004643	LVDLELARYYCKDFWEEEGWVSCFECDIIFYDLEKLYEHQLIHLREEVK*
draft_100655	draft_10065514	F051453	TKSVIVNLRMPSEDASVPEYIILEDSTDFSVNYVLLDADAGSPNATGLMKFITETSSTSTGAAGIKSRLTVTPGPGDVTANDDFGYTQTFEYFNDNIDVNLTTGLDVNL*
draft_100655	draft_1006553	F012682	MAAESQVLLDTEKKYIAKFFSDASESDVKKVDLSTLAWAKHTMTLSGAASPNFKIGEVLTVGSAETFLVTGFTAGASTVEVVGWDNTNKKATAIDTGSSNGDAISGGVSGANTRTLANSGNLTGLEWNVLVTKIMWITNGLQVAIEWDGSTAEKYIAELSGNGSWSMPGNEWPGIGINATGDSSEVLGDIQFSTTGHASGDSYTIIMELKKQAPGFDIPAYEENTSLGYKVDYLKGNFT*
draft_100655	draft_1006554	F005069	MSNETTIGDIVAFSRSDDAAGVKTAIGDVLQQKVMVSLESKKKDFAKTFLTKPNTDSKEPESQEEVTDGS*

Showing 1 to 31 of 31 entries

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300003437: Marine microbial communities from the San Pedro channel, Pacific Ocean in the San Pedro Ocean Time-series (SPOT) study- Sample 1

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences