3300003437: Marine microbial communities from the San Pedro channel, Pacific Ocean in the San Pedro Ocean Time-series (SPOT) study- Sample 1

Overview

Basic Information

• IMG/M Taxon OID: 3300003437
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111419 | Gp0104110 | Ga0059306
• Sample Name: Marine microbial communities from the San Pedro channel, Pacific Ocean in the San Pedro Ocean Time-series (SPOT) study- Sample 1
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 15266207
• Sequencing Scaffolds: 10
• Novel Protein Genes: 31
• Associated Families: 31

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → environmental samples → uncultured marine virus	1
Not Available	8
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The San Pedro Channel, Pacific Ocean In The San Pedro Ocean Time-Series (Spot) Study
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The San Pedro Channel, Pacific Ocean In The San Pedro Ocean Time-Series (Spot) Study

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine photic zone → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: San Pedro Channel, Pacific
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.42
  • Alt. (m): N/A
  • Depth (m): 890

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F000615	Metagenome / Metatranscriptome	984	Y
F001048	Metagenome / Metatranscriptome	793	Y
F002310	Metagenome / Metatranscriptome	572	Y
F002715	Metagenome / Metatranscriptome	535	Y
F003411	Metagenome / Metatranscriptome	488	Y
F004643	Metagenome / Metatranscriptome	429	Y
F005069	Metagenome / Metatranscriptome	413	Y
F005608	Metagenome / Metatranscriptome	395	Y
F006146	Metagenome / Metatranscriptome	380	Y
F006919	Metagenome	362	Y
F010791	Metagenome / Metatranscriptome	299	N
F011406	Metagenome / Metatranscriptome	291	Y
F012682	Metagenome / Metatranscriptome	278	Y
F013358	Metagenome / Metatranscriptome	272	N
F015654	Metagenome / Metatranscriptome	253	N
F017718	Metagenome / Metatranscriptome	239	Y
F025300	Metagenome	202	Y
F028833	Metagenome / Metatranscriptome	190	Y
F034216	Metagenome	175	Y
F041248	Metagenome / Metatranscriptome	160	Y
F042386	Metagenome / Metatranscriptome	158	N
F042933	Metagenome / Metatranscriptome	157	Y
F051453	Metagenome	144	Y
F052651	Metagenome / Metatranscriptome	142	Y
F055786	Metagenome	138	Y
F063768	Metagenome / Metatranscriptome	129	N
F075314	Metagenome	119	Y
F084346	Metagenome / Metatranscriptome	112	Y
F099439	Metagenome / Metatranscriptome	103	N
F105339	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
draft_100036	All Organisms → Viruses → environmental samples → uncultured marine virus	41800
draft_100041	Not Available	40519
draft_100177	Not Available	21047
draft_100234	Not Available	18735
draft_100250	Not Available	18147
draft_100339	Not Available	15381
draft_100594	Not Available	11815
draft_100611	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	11684
draft_100628	Not Available	11540
draft_100655	Not Available	11401

Sequences

Scaffold ID	Protein ID	Family	Sequence
draft_100036	draft_1000367	F002310	MNELIVNADGTVTVVGDAGSVSGIIAEAVEAATIPAEYGEDGVETKAAIVPDADTLMVEISAEDLKTHAWRLPKARAERLEEIRGDRNGGLKELDLEYQLADEGVHPTGLDKAAVAAKKAALRDLPVAAQAALDAMDNTDDMEAYQPRELV*
draft_100041	draft_10004114	F075314	MAEENKWKEAELRRDDIKKLLENTKKLAGMYSEIMEVKRESWEAVLRAKIKKAEKEKQNG
draft_100041	draft_10004116	F011406	MALIKATLFSELLQTFSAHSPDPMKPGKDIAKSFANYLKMGMNAGGFPTTNVIDAPTGMTIGQVFASQLPAGAAIGSQIASALTSMAATYLSTNQIGPPVVTPSHTPQLIQLFSAPQASGMSFAKELADVLDTWTKTWVVSGLIPGAPPIPFSGPLS*
draft_100041	draft_10004127	F034216	MSKESNLFGFLFCALLVIWAASSWGDPDLIDALIYYLSDGYYK*
draft_100177	draft_10017710	F003411	MYLIESLESETEAFEQLAEDAAKKESRYKGSWAKEYLSAKGSIKERESWADYKLADTQFDFKCAEALVKAKREKLLSLRTSIDAMRTLNANVRFQVGP*
draft_100234	draft_10023410	F010791	MSFEFRAGRKRVVKSVETVEEANKLMRKMIKIRNENSLWENIDVKTGHLRAVDELEKVMGAIFDVYETMSIYVNGKSVRKIWKRGF*
draft_100234	draft_10023412	F105339	MMKIDLTGTHEENMTAINNAEISEEFKAHIRKDLQEQVDRCLSSCFGVDLDIEHEKNSIPIHELVPKGMTIKEYFGND*
draft_100234	draft_10023424	F005608	MKTTKIEILEEGEFIFGSPTVGKYMVRRYEDEVEMGGGFFKTKKEALTHAREYKKDK*
draft_100234	draft_10023425	F028833	MNNLTYLWSDGMVDSIAKKVAEEPMENVDDLPQHIIDEERGDAIRQWRKEQAQMEMFDDPYLNWSGLR*
draft_100234	draft_10023427	F041248	MSPQKRARQEGAIERTQASILVYKEKLKSCEDDTEKKLLKKKIERAKTTIENTKIRK*
draft_100234	draft_10023429	F025300	MKKINVETLVPDTFKFLARDMDGKLYAFENEPSVAIDIACDNWDVKEGKFLQITNPVFLSAEGITHTGIDSVLGDWRDSLTEINNENVA*
draft_100250	draft_10025011	F042933	MVVEVVERDINGLEFTYENKDELVFEPNPNQLEPIEDEVND*
draft_100250	draft_1002502	F015654	MKRFFKEVYITGHSKEDKNTFDTFKDTKFYKVIDISTSKEVFELAEEVEELEDCDNVEYITFDEIRI*
draft_100250	draft_10025020	F013358	MSVRPKSVCDSCSATYIIVHELPEDMYTEQYCPFCGEEHEDIEEDVLLNEDWD*
draft_100339	draft_10033912	F002715	MPEHELQSVKLEVGLLKNEVEVRGRQIETLLQKLDLTTDKLQQLTVQIIQLNTRQEDYLRHSTSMTDEFKILHTRIGDLHDKQLAAQKDIEQRLDRLDQYKSKLMGMIIVVGGVVGTIVATTISVFLKD*
draft_100339	draft_10033914	F000245	MKTFTRFKESKLDDKLDKLVSNEIKKRKLAKFPVNATDDIKMRMKPNKPVFKFPSPNSDMMIHVYLRKMTPPSKKGMMAFNYQLEDK*
draft_100339	draft_10033915	F006919	MKSFIQHLKEFASYSTSDLVFMNNGQGSASSGLMIPLSGPMFKRIWPDTIRTTVFHTTDLSGLEKLKRLEGGKKTISAFFSMMSRYMEGGIASGGGIVVEMDADVLVSASDDIMSQVDNKGRRWVEMSWFANAQRYGTGPKFAVVERELNDLIRDLVVKHLEPIIGNRARTEQEFYLWGDMKKQLKGDGRKIAAVIKDYFDGVEKVIKKNSEVMGNIFYGYAKSKRQTEQAWDEQIVNNIEITKVHIIDFTTKAPSLQGQFDASKDLAKKNSWPMKVWDATETMDLEVYTRQVAQAEVRTR*
draft_100339	draft_1003394	F052651	MDINKEYFNDKSEAEKLRNVSSLVDSIVNAEPVEELKVDSGVGEGDGTEKLEVPEIDPLVDLVGKAISKGKPKGFFMQGVQSDDHPKL*
draft_100339	draft_1003395	F017718	MTTQNYDSSLDLVNDRLKQIDDIMEKFSGFPEVQQKLQGARDALVESEEEIMTYYDLTSIEKYNKT*
draft_100594	draft_1005942	F000615	VTRNQNNIVSGLERPVNIMCRIRTFYECSDGTMGFAEMVVSYEEDIAGLIRHWGTGGRMVITEHVEMTV*
draft_100594	draft_1005944	F084346	MTFHTIHPRYQVETSKEQSMLSSKQQAEDIYQKYVNQKIPCELFLNGQLQKEFKPL*
draft_100594	draft_1005946	F099439	MKTFEVDYETTIPPWRFGHEEIEAEDLATAKKKFCSKHEAARLLKVYMVNTDTLAK*
draft_100611	draft_1006117	F063768	MDMEAVQDPLTTAEGVAEFVVLAELSRALSERLAGWSVDGAGPGSSATMASLASRLDEHSTWWTERIPESVLLEGERTAASGSGRLVEVLDLLDVPASDRNAAVVPVLDRLVAYLGALAERLSPLGDAPALRTIRLVLADLVDRPR*
draft_100628	draft_10062812	F006146	MIITTTTMIIVQVIVVGCIMWTTPEPCPRKYRVTQDKGGELAHASDIFRYCTLDYGGKFILKEE*
draft_100628	draft_10062814	F042386	MNNAGLTTRYEEGDNGQFELFKDNASYMKEDDRDGIPKFFTLEHIEKRLGGLGEY*
draft_100628	draft_10062819	F055786	MICSNCYTSHIKPKHDVGHWWNNPLDSVYVCSDKCYTELEKLVKNRTWMDYKPVAIFGKKKKVEKKKTIEAITDKQFTDNL*
draft_100628	draft_10062820	F001048	MKIKSKKQFWWRLNHLKRNGGEITITDRTPEMDVKEFNRIELLVNKRVRWEIGSEGMAIWNVCGYKDIPTLAKAYGIK*
draft_100628	draft_1006285	F004643	LVDLELARYYCKDFWEEEGWVSCFECDIIFYDLEKLYEHQLIHLREEVK*
draft_100655	draft_10065514	F051453	TKSVIVNLRMPSEDASVPEYIILEDSTDFSVNYVLLDADAGSPNATGLMKFITETSSTSTGAAGIKSRLTVTPGPGDVTANDDFGYTQTFEYFNDNIDVNLTTGLDVNL*
draft_100655	draft_1006553	F012682	MAAESQVLLDTEKKYIAKFFSDASESDVKKVDLSTLAWAKHTMTLSGAASPNFKIGEVLTVGSAETFLVTGFTAGASTVEVVGWDNTNKKATAIDTGSSNGDAISGGVSGANTRTLANSGNLTGLEWNVLVTKIMWITNGLQVAIEWDGSTAEKYIAELSGNGSWSMPGNEWPGIGINATGDSSEVLGDIQFSTTGHASGDSYTIIMELKKQAPGFDIPAYEENTSLGYKVDYLKGNFT*
draft_100655	draft_1006554	F005069	MSNETTIGDIVAFSRSDDAAGVKTAIGDVLQQKVMVSLESKKKDFAKTFLTKPNTDSKEPESQEEVTDGS*