Scaffold Water_100027

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_100027
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36571
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (26.79%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (26.67%)
• Associated Families: 15

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003579	Metagenome / Metatranscriptome	478	Y
F005113	Metagenome / Metatranscriptome	411	Y
F009125	Metagenome	322	Y
F012017	Metagenome / Metatranscriptome	284	N
F013396	Metagenome	271	N
F022191	Metagenome	215	N
F029672	Metagenome / Metatranscriptome	187	Y
F043279	Metagenome	156	N
F046246	Metagenome	151	N
F046325	Metagenome / Metatranscriptome	151	N
F050991	Metagenome / Metatranscriptome	144	N
F074549	Metagenome	119	N
F083888	Metagenome	112	N
F083896	Metagenome / Metatranscriptome	112	N
F098560	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Water_10002712	F012017	AGG	MATKRILIGTPLKGDIPKSYFRTSLVMASAKIPDVKLDWILLDGPAVQIARNEIAAYAIENNFDEVIFWDKDVLAQRNGVDVTDSALMRLIGHDKDIVTSVYASRSLDTHWHVTPLPNEMANEQGLQKVERASIGFSKIKVSVFKAIAHDNPDRVAMLLDPNRAPRSIPELFPMELQGRNIPSYRLQQIKNALTDCKNDDKLRMRIERELSVRYDEPNAYLSEDYGFCKLARESGYDIWMDTLMVLGHESRVTLPIETPKLMEMLSEPWRKEELAVIKTQLMEQNQKAKEKNNNLRN*
Water_10002714	F022191	N/A	MAKGVKVDGKHGKATYSPQRLINSVAMATLDGRGLGLKKHPSLGDVTVDDRRVLQRIVGITVEEFNQRLIGKLDTLADKIVDRMLETVDDTPLQTLGFNLAVAIDKRQRIAGLNATQGANVNIQVNNYGSLSKEEIVARLSGKTGVPTIQSAPVDIGNCNDIDAKISKKTGAVKD*
Water_10002720	F029672	N/A	MKSHTRNHSHREAAQARDEQRRSEYARFAPLSAEIAAIYDSRRLTEADIDHMAELDTEARTFNRQSVNYHE*
Water_10002732	F083896	N/A	MQAVHQIELGEWLRDQGITQVLEHTPDSWVDAFEEKAASLLWNQGSFTAEEVVSRIGPPPNHLNAIGAVCRAYARRNDLVGSYEKATNPAAHARVIVRWRDGGNDK*
Water_10002734	F046246	N/A	MNFSEHAFDACCREAKAIGRRLNKTEWLEAMQEAYDSYPHEGLLATDAPKVRATRIKAVDAEWLEELEKNPAYAGIDIKRELGKAQAWASVRKVGVSQMRFLNWLNKAEATQRPIQFNGSGATSFPPPSAQTSSEPKGWREWVRENSTDPSNADRPWNALETVAQKYILTQLQK*
Water_10002739	F043279	AGGAGG	MTPEEATPTCQPEVAHARAKDLDAASNAKLALICGELTAGEIRTLRAMLSYILRPPAEGKSTGYEGMTNALQTIRRSNEDVEQWLAQHIGNLRDGRDRMQRQIYSLKRRISKIENTIY*
Water_1000274	F046325	N/A	MSSDQIVTDIPKEFVRKWWWEIQNGLPNEKAKVHEDQARLAAEMRKQGSTQMEGLGQMAARINSRLFFRLQGQHGNNVHEWMPEYLKDNPHLCAVGYRPKVNAARHGLTGGWMKTKD*
Water_10002741	F098560	N/A	MKIEMKRPNKEMADSIETMLNDFVKISTIARNLKTQVVTVYRYISYLQYTKVMVSDTELKMIINHRKARKASLVAPAQSTPAPGVTHAATPVLGA*
Water_10002744	F083888	N/A	MNYKTLPNSNHSPCECNATSGDRIKGIPDKVQRPARKEINVTSIGSKMKIDNKGYKIVNLSATLQPVGTDGKGMKKKKKYMEDDGDSAYDES*
Water_10002751	F009125	N/A	MTSENIRATLTAATPAVAMVSLSQINEVAALVGTLLGIAFLLWRWHKQWKAGNVKNLD*
Water_10002752	F074549	GGGGG	MNLTDILFNAASGGVVGSLLHLGTSFFETWRKKKDAEVEIMLLNAKLAAAEKEAAWTAFTASQKTGDTTLVIPTGTWPWVGSIYVLVDAFRQLTRPGLTWAGFIFLTSVYFSASPEVRATMSPEIQFGSWTLIFWWVGARYNKAK*
Water_10002753	F013396	N/A	VTLRRSILVAVLALGLVVVLGLALRSERVLTAGLPLRIVAASEADAWTLAGPSAVVVLGTGSMTPYIPAAPAGADPLRTVCALVVLVPGASYADIKAGALCIYVPVWAGRNVMHQAAQIDAGGWIMTGLGNKEYENKERVTAANFVGIVARTYVWGK*
Water_10002754	F005113	GAGG	MTKDEHKNAIVTQLQQQSLNLLVDSLAAALAEIETLKAAAADKPTP*
Water_10002755	F003579	N/A	MTIIPIAPYTMGSPAAPKVGTQFEVRYVQYTSPTAVADCHLLDAEGVEIMPVGLVPATAEQCAVWVNDDKFAEVLAVNAGFELPEE*
Water_1000278	F050991	N/A	MKKRRDPHQSSTEKFSNLRHTMFGLVGNDNFQNFIEELREMQHSTMIDLCSDAVVQNDRMTLASTGELRAYSQIIGLYDDFVQQQLLQAETDAEERGA*