Scaffold pct2_10028241

Overview

Basic Information

• Taxon OID: 3300002854
• Scaffold ID: pct2_10028241
• Source Dataset Name: Lignocellulose-degrading enriched microbial communities from Concordia, Entre Rios, Argentina - CMC-Pine-T2-ill-ass
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: INDEAR Instituto de Agrobiotecnologia Rosario
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2322
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Lab Enrichment → Defined Media → Aerobic Media → Unclassified → Lignocellulose-Degrading Enriched → Lignocellulose-Degrading Enriched Microbial Communities From Concordia, Entre Rios, Argentina

Source Dataset Sampling Location

• Location Name: Argentina: Entre Rios
• Coordinates
  • Lat. (^o): -31.372253
  • Long. (^o): -58.116672

Associated Families

Family	Category	Number of Sequences	3D Structure?
F096514	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
pct2_100282411	F096514	AGGAG	MDLVDLYHRRGIALVRSKLRGSAAARRGYGRLARLYSEQIERQRGAPTVVPELTPAL*