Basic Information | |
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Taxon OID | 3300002835 Open in IMG/M |
Scaffold ID | B570J40625_100025585 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9621 |
Total Scaffold Genes | 27 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (85.19%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 43.099444 | Long. (o) | -89.404444 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000447 | Metagenome / Metatranscriptome | 1128 | Y |
F011487 | Metagenome / Metatranscriptome | 290 | Y |
F013526 | Metagenome / Metatranscriptome | 270 | Y |
F081245 | Metagenome / Metatranscriptome | 114 | Y |
F099300 | Metagenome / Metatranscriptome | 103 | N |
Protein ID | Family | RBS | Sequence |
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B570J40625_10002558510 | F013526 | AGGAG | MKKNVLISFVTEADTDLQAVFNLNKVFAKLSENELEKFNAFEVLPVE* |
B570J40625_10002558513 | F081245 | N/A | LGALISMDKIQKLELENYLADEQIDPLAKMLDEIIKKGSYTK* |
B570J40625_10002558519 | F099300 | AGG | MGVMKELHLEITTCELCYGTGWLHFGNSLDYDTESCDCNPHQLFITKENN* |
B570J40625_10002558520 | F000447 | AGG | MGYIEIFRIDNEGAGWIDLSKATDQELLDLEIGLFQEGAI* |
B570J40625_1000255859 | F011487 | AGGAG | MTYENDEILDEYYATVCPSCKENAVDAYEDKCTHCLLEEMSATYNEDIALEMSLGLDY* |
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