Scaffold B570J40625_100016269

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100016269
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12958
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (73.68%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002502	Metagenome / Metatranscriptome	553	Y
F007525	Metagenome / Metatranscriptome	349	Y
F008496	Metagenome / Metatranscriptome	332	Y
F016662	Metagenome / Metatranscriptome	245	Y
F027180	Metagenome / Metatranscriptome	195	Y
F032881	Metagenome / Metatranscriptome	179	Y
F047680	Metagenome	149	Y
F072347	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10001626911	F016662	GGAG	MVYLVATTEVIYDEQYIIKEMLATGEYGVHGHPISHEAIVEFIKDREWQIEHSLFLDKFDIPAQISIKDEDGTDLFFARNKYEILDNYPQV*
B570J40625_10001626916	F007525	AGTAGG	MKTYEGVTVEYTQTIPTSKQMPEFYVWQEGYESYATITYLDRVVEIERGGEMHLTIPNLVNGELTDEYGVIVRYSDDLEAAGINDDIQLMQFIKTISNAGFEVYRMNPWWELFAHNDDMGEVYDTFYEAVDAGIDHILDDKGWD*
B570J40625_1000162692	F047680	AGG	MSKMKDLYGILTEWYPDGNYTEQQLWEAIAESQGMDYSEIADGDLAEWL*
B570J40625_10001626921	F072347	AGGAG	MDNRTKAEILVQFTQDNFNDDLYEDFFDYNDLGIPMAIAVIQEMVILTDSGEQLLEETWLELCELFGADPNGEYESIDDLTS*
B570J40625_10001626929	F032881	GGA	MSSTLELVVQELQNRIGQITSQYETQIAVLKAQVTEAIQAKDEEIKNLKESKLTVKPNKEES*
B570J40625_1000162693	F027180	GGAG	MAMKLFNKKSELTEDEVYARLDKLMGEMSSIDIYLEYLELREGM*
B570J40625_1000162694	F002502	GAG	MAKTIAPTVGSQFVTAKSKVTGIVQEVVKNANGTMRIRLDVNGQDRWTTAK*
B570J40625_1000162698	F008496	AGGAG	VEFTTSEPTFGIPATITPMTDQVAVTPAYDPKATILVRKGYYYGTPSDSKFEVENADDISRTYWRLDALQETNNRNSRAQDKLKEYLVENFDEIGEEHATEIANIFGIDLSKEVEVEFNVTIKATVSIPVNEDVSDLSVYDFDIEISSNESKYEILESDADIDSIDERY*