Scaffold PetF_10014075

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold PetF_10014075

Scaffold PetF_10014075

Overview

Basic Information
Taxon OID	3300002734 Open in IMG/M
Scaffold ID	PetF_10014075 Open in IMG/M
Source Dataset Name	Microbial sample from Petrosia ficiformis
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4492
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Petrosia Ficiformis → Petrosia Ficiformis Microbial Communities From Milos, Greece

Source Dataset Sampling Location
Location Name	Milos,Greece
Coordinates	Lat. (^o)	36.76759	Long. (^o)	24.51422	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F097867	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
PetF_100140755	F097867	N/A	MLDTGDMLWIPPGCSHRNIGDMLTTRIILYTRNPLTLSQEYSSRAERVAGAA*

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