Scaffold MGVB_100025

Overview

Basic Information

• Taxon OID: 3300002731
• Scaffold ID: MGVB_100025
• Source Dataset Name: METATRANSCRIPTOMICS AND GENOMIC CONTEXT IN MICROBIAL COMMUNITIES INVOLVED IN THE BIOGEOCHEMICAL CYCLES IN MANGROVES
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33319
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (90.24%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Unclassified → Mangrove Soil → Mangrove Soil Microbial Communities From Brazil, Analyzing Biochemical Cycles

Source Dataset Sampling Location

• Location Name: coast of the S?o Paulo state (Brazil)
• Coordinates
  • Depth (m): .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047517	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
MGVB_10002524	F047517	AGGAG	MLKVLRQHPVLIGMAEVLADAVRYVAIVLVVLVVLGQLVAALGS*