Metagenome Family F047517

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F047517
Family Type	Metagenome
Number of Sequences	149
Average Sequence Length	42 residues
Representative Sequence	MLKALRHHPLLVGTAEVLVDAARYVTIVLVVLLLLGQLAKVAL
Number of Associated Samples	42
Number of Associated Scaffolds	149

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	85.71 %
% of genes near scaffold ends (potentially truncated)	15.44 %
% of genes from short scaffolds (< 2000 bps)	93.96 %
Associated GOLD sequencing projects	34
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (88.591 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (44.295 % of family members)
Environment Ontology (ENVO)	Unclassified (69.128 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (71.812 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.89% β-sheet: 0.00% Coil/Unstructured: 52.11%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.51
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.51
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 149 Family Scaffolds
PF05876	GpA_ATPase	52.35
PF07536	HWE_HK	4.03
PF11994	DUF3489	1.34
PF13362	Toprim_3	0.67
PF05532	CsbD	0.67
PF13701	DDE_Tnp_1_4	0.67
PF08734	GYD	0.67
PF03864	Phage_cap_E	0.67
PF02371	Transposase_20	0.67

COG ID	Name	Functional Category	% Frequency in 149 Family Scaffolds
COG5525	Phage terminase, large subunit GpA	Mobilome: prophages, transposons [X]	52.35
COG3920	Two-component sensor histidine kinase, HisKA and HATPase domains	Signal transduction mechanisms [T]	4.03
COG4251	Bacteriophytochrome (light-regulated signal transduction histidine kinase)	Signal transduction mechanisms [T]	4.03
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	0.67
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.67
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.67

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.59 %
Unclassified	root	N/A	11.41 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.59 %
Unclassified	root	N/A	11.41 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	88.59 %
Unclassified	root	N/A	11.41 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	77.18 %
Unclassified	root	N/A	11.41 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	38.26 %
Unclassified	root	N/A	11.41 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2.01 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.41 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.36 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	2.01 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	1.34 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.67 %
Magnetococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Magnetococcales	0.67 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.41 %
Nitrosomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae	2.01 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.67 %
alpha proteobacterium BAL199	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → alpha proteobacterium BAL199	0.67 %
Magnetococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Magnetococcales → Magnetococcaceae	0.67 %
Salinarimonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Salinarimonadaceae	0.67 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.41 %
Nitrosomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosomonas	2.01 %
Salinarimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Salinarimonadaceae → Salinarimonas	0.67 %
Roseibaca	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Roseibaca	0.67 %
Magnetofaba	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Magnetococcales → Magnetococcaceae → Magnetofaba	0.67 %
alpha proteobacterium BAL199	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → alpha proteobacterium BAL199	0.67 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.41 %
Nitrosomonas communis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosomonas → Nitrosomonas communis	2.01 %
Roseibaca ekhonensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Roseibaca → Roseibaca ekhonensis	0.67 %
Salinarimonas rosea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Salinarimonadaceae → Salinarimonas → Salinarimonas rosea	0.67 %
Magnetofaba australis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Magnetococcales → Magnetococcaceae → Magnetofaba → Magnetofaba australis	0.67 %
alpha proteobacterium BAL199	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → alpha proteobacterium BAL199	0.67 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.67 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2067725004\|GPKC_F5V46DG01BUT7F	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300002731\|MGVB_100025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	33319	Open in IMG/M
3300003996\|Ga0055467_10200263	All Organisms → cellular organisms → Bacteria → Proteobacteria	616	Open in IMG/M
3300003997\|Ga0055466_10088060	All Organisms → cellular organisms → Bacteria	829	Open in IMG/M
3300003997\|Ga0055466_10282954	All Organisms → cellular organisms → Bacteria → Proteobacteria	504	Open in IMG/M
3300003999\|Ga0055469_10070254	All Organisms → cellular organisms → Bacteria → Proteobacteria	959	Open in IMG/M
3300003999\|Ga0055469_10133588	All Organisms → cellular organisms → Bacteria → Proteobacteria	741	Open in IMG/M
3300004003\|Ga0055445_10247288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	614	Open in IMG/M
3300004003\|Ga0055445_10256721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosomonas → Nitrosomonas communis	603	Open in IMG/M
3300004005\|Ga0055448_10317863	All Organisms → cellular organisms → Bacteria → Proteobacteria	617	Open in IMG/M
3300004007\|Ga0055476_10136899	All Organisms → cellular organisms → Bacteria → Proteobacteria	825	Open in IMG/M
3300004055\|Ga0055480_10342363	All Organisms → cellular organisms → Bacteria → Proteobacteria	605	Open in IMG/M
3300005981\|Ga0081538_10227930	All Organisms → cellular organisms → Bacteria → Proteobacteria	731	Open in IMG/M
3300005981\|Ga0081538_10287271	All Organisms → cellular organisms → Bacteria → Proteobacteria	609	Open in IMG/M
3300006894\|Ga0079215_10387494	All Organisms → cellular organisms → Bacteria	819	Open in IMG/M
3300006918\|Ga0079216_11718661	All Organisms → cellular organisms → Bacteria → Proteobacteria	536	Open in IMG/M
3300007769\|Ga0102952_1105791	Not Available	862	Open in IMG/M
3300009146\|Ga0105091_10410984	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300009146\|Ga0105091_10459090	All Organisms → cellular organisms → Bacteria → Proteobacteria	642	Open in IMG/M
3300009157\|Ga0105092_10654997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	609	Open in IMG/M
3300009168\|Ga0105104_10370631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Roseibaca → Roseibaca ekhonensis	794	Open in IMG/M
3300014254\|Ga0075312_1132035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Salinarimonadaceae → Salinarimonas → Salinarimonas rosea	542	Open in IMG/M
3300014256\|Ga0075318_1137871	Not Available	513	Open in IMG/M
3300014259\|Ga0075311_1055763	All Organisms → cellular organisms → Bacteria → Proteobacteria	778	Open in IMG/M
3300014268\|Ga0075309_1078798	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300014268\|Ga0075309_1112204	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	671	Open in IMG/M
3300014270\|Ga0075325_1087288	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300014270\|Ga0075325_1155563	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	582	Open in IMG/M
3300014270\|Ga0075325_1208340	All Organisms → cellular organisms → Bacteria → Proteobacteria	525	Open in IMG/M
3300014270\|Ga0075325_1222053	All Organisms → cellular organisms → Bacteria → Proteobacteria	514	Open in IMG/M
3300014271\|Ga0075326_1101507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	811	Open in IMG/M
3300014271\|Ga0075326_1301854	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosomonas → Nitrosomonas communis	502	Open in IMG/M
3300014271\|Ga0075326_1302670	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300014272\|Ga0075327_1117957	All Organisms → cellular organisms → Bacteria → Proteobacteria	812	Open in IMG/M
3300014272\|Ga0075327_1255006	All Organisms → cellular organisms → Bacteria → Proteobacteria	573	Open in IMG/M
3300014302\|Ga0075310_1076170	All Organisms → cellular organisms → Bacteria → Proteobacteria	684	Open in IMG/M
3300014310\|Ga0075331_1051101	All Organisms → cellular organisms → Bacteria → Proteobacteria	927	Open in IMG/M
3300014310\|Ga0075331_1059380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	864	Open in IMG/M
3300014310\|Ga0075331_1177772	All Organisms → cellular organisms → Bacteria → Proteobacteria	531	Open in IMG/M
3300014320\|Ga0075342_1135412	All Organisms → cellular organisms → Bacteria → Proteobacteria	663	Open in IMG/M
3300025567\|Ga0210076_1041922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	987	Open in IMG/M
3300025568\|Ga0210095_1161849	All Organisms → cellular organisms → Bacteria → Proteobacteria	538	Open in IMG/M
3300025796\|Ga0210113_1013459	All Organisms → cellular organisms → Bacteria → Proteobacteria	1712	Open in IMG/M
3300026032\|Ga0208419_1041696	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300026090\|Ga0208912_1034171	All Organisms → cellular organisms → Bacteria	741	Open in IMG/M
3300026111\|Ga0208291_1031464	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	972	Open in IMG/M
3300026535\|Ga0256867_10179364	Not Available	783	Open in IMG/M
3300026535\|Ga0256867_10296562	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	573	Open in IMG/M
3300026535\|Ga0256867_10297705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	572	Open in IMG/M
3300026535\|Ga0256867_10308957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	558	Open in IMG/M
3300027647\|Ga0214468_1186416	All Organisms → cellular organisms → Bacteria → Proteobacteria	517	Open in IMG/M
3300027650\|Ga0256866_1208570	All Organisms → cellular organisms → Bacteria → Proteobacteria	527	Open in IMG/M
3300027964\|Ga0256864_1065013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1004	Open in IMG/M
3300027964\|Ga0256864_1137728	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300027964\|Ga0256864_1238081	All Organisms → cellular organisms → Bacteria → Proteobacteria	521	Open in IMG/M
3300030006\|Ga0299907_10117100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2192	Open in IMG/M
3300030006\|Ga0299907_10161426	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1853	Open in IMG/M
3300030006\|Ga0299907_10193741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1678	Open in IMG/M
3300030006\|Ga0299907_10277356	All Organisms → cellular organisms → Bacteria → Proteobacteria	1372	Open in IMG/M
3300030006\|Ga0299907_10279923	Not Available	1365	Open in IMG/M
3300030006\|Ga0299907_10285542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1349	Open in IMG/M
3300030006\|Ga0299907_10296364	All Organisms → cellular organisms → Bacteria → Proteobacteria	1320	Open in IMG/M
3300030006\|Ga0299907_10369861	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1157	Open in IMG/M
3300030006\|Ga0299907_10401854	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Magnetococcales → Magnetococcaceae → Magnetofaba → Magnetofaba australis	1100	Open in IMG/M
3300030006\|Ga0299907_10513722	All Organisms → cellular organisms → Bacteria → Proteobacteria	945	Open in IMG/M
3300030006\|Ga0299907_10532704	All Organisms → cellular organisms → Bacteria → Proteobacteria	924	Open in IMG/M
3300030006\|Ga0299907_10620941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	838	Open in IMG/M
3300030006\|Ga0299907_10660883	All Organisms → cellular organisms → Bacteria → Proteobacteria	805	Open in IMG/M
3300030006\|Ga0299907_10663984	Not Available	802	Open in IMG/M
3300030006\|Ga0299907_10709345	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	769	Open in IMG/M
3300030006\|Ga0299907_10729147	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300030006\|Ga0299907_10759176	All Organisms → cellular organisms → Bacteria → Proteobacteria	736	Open in IMG/M
3300030006\|Ga0299907_10802274	All Organisms → cellular organisms → Bacteria → Proteobacteria	710	Open in IMG/M
3300030006\|Ga0299907_10837794	Not Available	690	Open in IMG/M
3300030006\|Ga0299907_10845646	Not Available	686	Open in IMG/M
3300030006\|Ga0299907_11099328	All Organisms → cellular organisms → Bacteria → Proteobacteria	577	Open in IMG/M
3300030006\|Ga0299907_11237666	All Organisms → cellular organisms → Bacteria → Proteobacteria	534	Open in IMG/M
3300030006\|Ga0299907_11241069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	533	Open in IMG/M
3300030006\|Ga0299907_11306261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	515	Open in IMG/M
3300030006\|Ga0299907_11313072	Not Available	513	Open in IMG/M
3300030006\|Ga0299907_11345609	All Organisms → cellular organisms → Bacteria → Proteobacteria	505	Open in IMG/M
3300030606\|Ga0299906_10006055	All Organisms → cellular organisms → Bacteria → Proteobacteria	9812	Open in IMG/M
3300030606\|Ga0299906_10343310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosomonas → Nitrosomonas communis	1161	Open in IMG/M
3300030606\|Ga0299906_10539809	All Organisms → cellular organisms → Bacteria → Proteobacteria	890	Open in IMG/M
3300030606\|Ga0299906_10579943	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	852	Open in IMG/M
3300030606\|Ga0299906_11178038	Not Available	553	Open in IMG/M
3300030606\|Ga0299906_11354345	All Organisms → cellular organisms → Bacteria → Proteobacteria	507	Open in IMG/M
3300030619\|Ga0268386_10104692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2187	Open in IMG/M
3300030619\|Ga0268386_10136082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	1880	Open in IMG/M
3300030619\|Ga0268386_10147346	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1795	Open in IMG/M
3300030619\|Ga0268386_10181747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1585	Open in IMG/M
3300030619\|Ga0268386_10300826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1161	Open in IMG/M
3300030619\|Ga0268386_10354460	All Organisms → cellular organisms → Bacteria → Proteobacteria	1045	Open in IMG/M
3300030619\|Ga0268386_10355442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1043	Open in IMG/M
3300030619\|Ga0268386_10361604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1032	Open in IMG/M
3300030619\|Ga0268386_10417741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	939	Open in IMG/M
3300030619\|Ga0268386_10527570	All Organisms → cellular organisms → Bacteria	803	Open in IMG/M
3300030619\|Ga0268386_10706325	All Organisms → cellular organisms → Bacteria → Proteobacteria	657	Open in IMG/M
3300030619\|Ga0268386_10710381	All Organisms → cellular organisms → Bacteria → Proteobacteria	655	Open in IMG/M
3300030619\|Ga0268386_10813235	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300030619\|Ga0268386_10975056	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	524	Open in IMG/M
3300030619\|Ga0268386_11016107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	509	Open in IMG/M
3300030619\|Ga0268386_11016433	All Organisms → cellular organisms → Bacteria → Proteobacteria	509	Open in IMG/M
3300030620\|Ga0302046_10150621	All Organisms → cellular organisms → Bacteria	1909	Open in IMG/M
3300030620\|Ga0302046_10174893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1763	Open in IMG/M
3300030620\|Ga0302046_10184388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1715	Open in IMG/M
3300030620\|Ga0302046_10358015	All Organisms → cellular organisms → Bacteria → Proteobacteria	1199	Open in IMG/M
3300030620\|Ga0302046_10368867	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1180	Open in IMG/M
3300030620\|Ga0302046_10391552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → alpha proteobacterium BAL199	1141	Open in IMG/M
3300030620\|Ga0302046_10437225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1073	Open in IMG/M
3300030620\|Ga0302046_10555077	All Organisms → cellular organisms → Bacteria → Proteobacteria	938	Open in IMG/M
3300030620\|Ga0302046_10839321	Not Available	738	Open in IMG/M
3300030620\|Ga0302046_10888293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	713	Open in IMG/M
3300031228\|Ga0299914_10083311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2785	Open in IMG/M
3300031228\|Ga0299914_10091575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2659	Open in IMG/M
3300031228\|Ga0299914_10103399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2502	Open in IMG/M
3300031228\|Ga0299914_10319039	All Organisms → cellular organisms → Bacteria	1366	Open in IMG/M
3300031228\|Ga0299914_10423532	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1159	Open in IMG/M
3300031228\|Ga0299914_10499112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1051	Open in IMG/M
3300031228\|Ga0299914_10602804	All Organisms → cellular organisms → Bacteria → Proteobacteria	938	Open in IMG/M
3300031228\|Ga0299914_10613957	All Organisms → cellular organisms → Bacteria	928	Open in IMG/M
3300031228\|Ga0299914_10617960	All Organisms → cellular organisms → Bacteria → Proteobacteria	924	Open in IMG/M
3300031228\|Ga0299914_10773736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	803	Open in IMG/M
3300031228\|Ga0299914_10882495	Not Available	739	Open in IMG/M
3300031228\|Ga0299914_10910789	All Organisms → cellular organisms → Bacteria → Proteobacteria	724	Open in IMG/M
3300031228\|Ga0299914_10920884	All Organisms → cellular organisms → Bacteria → Proteobacteria	719	Open in IMG/M
3300031228\|Ga0299914_10938951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	711	Open in IMG/M
3300031228\|Ga0299914_11217927	All Organisms → cellular organisms → Bacteria → Proteobacteria	602	Open in IMG/M
3300031228\|Ga0299914_11356392	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300031228\|Ga0299914_11426991	All Organisms → cellular organisms → Bacteria → Proteobacteria	543	Open in IMG/M
3300031229\|Ga0299913_10210571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1924	Open in IMG/M
3300031229\|Ga0299913_10330798	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1511	Open in IMG/M
3300031229\|Ga0299913_10331082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1510	Open in IMG/M
3300031229\|Ga0299913_10428824	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1310	Open in IMG/M
3300031229\|Ga0299913_10740029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	959	Open in IMG/M
3300031229\|Ga0299913_10747902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	953	Open in IMG/M
3300031229\|Ga0299913_10822318	All Organisms → cellular organisms → Bacteria → Proteobacteria	902	Open in IMG/M
3300031229\|Ga0299913_10888914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	861	Open in IMG/M
3300031229\|Ga0299913_10891242	All Organisms → cellular organisms → Bacteria → Proteobacteria	860	Open in IMG/M
3300031229\|Ga0299913_11181123	All Organisms → cellular organisms → Bacteria → Proteobacteria	726	Open in IMG/M
3300031229\|Ga0299913_11301046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	684	Open in IMG/M
3300031229\|Ga0299913_11408363	Not Available	652	Open in IMG/M
3300031229\|Ga0299913_11554493	Not Available	614	Open in IMG/M
3300031229\|Ga0299913_11627211	Not Available	597	Open in IMG/M
3300031229\|Ga0299913_11718873	Not Available	577	Open in IMG/M
3300031229\|Ga0299913_11751634	All Organisms → cellular organisms → Bacteria → Proteobacteria	570	Open in IMG/M
3300031229\|Ga0299913_11899388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	543	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.66%
Host-Associated	Host-Associated	1.34%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.25%
Aquatic	Environmental → Aquatic	11.41%
Plants	Host-Associated → Plants	1.34%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.25%
Marine	Environmental → Aquatic → Marine	8.72%
Freshwater	Environmental → Aquatic → Freshwater	2.68%
Roots	Host-Associated → Plants → Roots	1.34%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	71.14%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	15.44%
Wetlands	Environmental → Aquatic → Marine → Wetlands	8.72%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.68%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.34%
Sand	Environmental → Terrestrial → Soil → Sand	0.67%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	44.30%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	24.83%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	15.44%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	8.72%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.68%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.34%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	1.34%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.67%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.67%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	44.30%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	24.83%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	14.77%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	8.72%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	2.68%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.34%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	1.34%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.67%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.67%
Mangrove Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Mangrove Soil	0.67%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2067725004	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300002731	METATRANSCRIPTOMICS AND GENOMIC CONTEXT IN MICROBIAL COMMUNITIES INVOLVED IN THE BIOGEOCHEMICAL CYCLES IN MANGROVES	Environmental	Open in IMG/M
3300003996	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2	Environmental	Open in IMG/M
3300003997	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D1	Environmental	Open in IMG/M
3300003999	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D2	Environmental	Open in IMG/M
3300004003	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWA_D1	Environmental	Open in IMG/M
3300004005	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWA_D2	Environmental	Open in IMG/M
3300004007	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_CordC_D2	Environmental	Open in IMG/M
3300004055	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWB_D2	Environmental	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007769	Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_D1_MG	Environmental	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300014254	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D2	Environmental	Open in IMG/M
3300014256	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleB_D2	Environmental	Open in IMG/M
3300014259	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D1	Environmental	Open in IMG/M
3300014268	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D1	Environmental	Open in IMG/M
3300014270	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailA_D1	Environmental	Open in IMG/M
3300014271	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailA_D2	Environmental	Open in IMG/M
3300014272	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailB_D1	Environmental	Open in IMG/M
3300014302	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D2	Environmental	Open in IMG/M
3300014310	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_TuleA_D1	Environmental	Open in IMG/M
3300014320	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D1	Environmental	Open in IMG/M
3300025567	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025568	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWA_D1 (SPAdes)	Environmental	Open in IMG/M
3300025796	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2 (SPAdes)	Environmental	Open in IMG/M
3300026032	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D1 (SPAdes)	Environmental	Open in IMG/M
3300026090	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailA_D2 (SPAdes)	Environmental	Open in IMG/M
3300026111	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailB_D1 (SPAdes)	Environmental	Open in IMG/M
3300026535	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (HiSeq)	Environmental	Open in IMG/M
3300027647	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38 HiSeq	Environmental	Open in IMG/M
3300027650	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67 HiSeq	Environmental	Open in IMG/M
3300027964	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111 HiSeq	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300030606	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT145D125	Environmental	Open in IMG/M
3300030619	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)	Environmental	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300031228	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPKC_03465460	2067725004	Soil	PLWVGTAEVLVDTVRHVAVVLVLLLVLAQAIKLAF
MGVB_10002524	3300002731	Mangrove Soil	MLKVLRQHPVLIGMAEVLADAVRYVAIVLVVLVVLGQLVAALGS*
Ga0055467_102002632	3300003996	Natural And Restored Wetlands	MKALRCHPLLVGTTELLVDAARYVAIVLVVLLLVGQLAKVAL*
Ga0055466_100880602	3300003997	Natural And Restored Wetlands	VLRTLLQRPLLVGTTEVLVDAVRYVAIVLVVLLLVGQLAKVAL*
Ga0055466_102829542	3300003997	Natural And Restored Wetlands	MLKALRHHPLLVGTAGVLVDAARYVAIVLVVLLLVGHLAKVAL*
Ga0055469_100702542	3300003999	Natural And Restored Wetlands	MLKALRHHPLLVGTVEVLVDAARYVAIVLVMLLLLGQLKAAL*
Ga0055469_101335882	3300003999	Natural And Restored Wetlands	MLKALRHPLLVGTAELLVDAVRYVAIVLVVLLLVGQLAKVAL*
Ga0055445_102472882	3300004003	Natural And Restored Wetlands	MLRTLRRLLPLVGMAEVLADAVRYVAIVLVVLMVLGQVVAALGS*
Ga0055445_102567212	3300004003	Natural And Restored Wetlands	MLRTLRYSPLLVGMTEVLADAVRYVAIVLVVLMLLGQVVAALGS*
Ga0055448_103178632	3300004005	Natural And Restored Wetlands	MLKALRQHSLLIGMAEVLADAVRYVAVVLVVLVIFGQVVAALGS*
Ga0055476_101368992	3300004007	Natural And Restored Wetlands	MLWTPRRQPLLVGTVEVLADAVRYVAIVLVVLTLLGQVVRLAALGS*
Ga0055480_103423632	3300004055	Natural And Restored Wetlands	MLKVLRQDPVLVGMVEVLTDAVRYVAIVLVVLMLLGQVVAALGS*
Ga0081538_102279302	3300005981	Tabebuia Heterophylla Rhizosphere	MLKALRERPLMVGTAEVLLDAARYVTIVLIVIVLLGQLARVAL*
Ga0081538_102872712	3300005981	Tabebuia Heterophylla Rhizosphere	MLKALRHHPVMVGMVEVLADAVRYVTIILLVLLLLGQLAKVAL*
Ga0079215_103874942	3300006894	Agricultural Soil	MLKALRHRPLLVGTAEVLVDAARYVAIVLVVLLLMGQLAKVAL*
Ga0079216_117186612	3300006918	Agricultural Soil	MLKALRHHPLMVGTVEVLVDAARYVTIVLLVLLLMGQLAEVAL*
Ga0102952_11057911	3300007769	Soil	MLKALRQHPVLIGTAEVLSDAIRYVAIVLVVLVVLGQVVAALGS*
Ga0105091_104109841	3300009146	Freshwater Sediment	MRFMLKALRHHQLLVDTVELLVDVTRYVAIMLAVLLLLGQLANVAL*
Ga0105091_104590902	3300009146	Freshwater Sediment	MLKALRHHSVMVGTTELLVDAARYIAIVLVMLVLLGHLAKVAL*
Ga0105092_106549972	3300009157	Freshwater Sediment	MWFMLKALRHHPLLVGTAGVLVDAARYVAIVLVVLLLMGQLAKVAL*
Ga0105104_103706311	3300009168	Freshwater Sediment	EIGFMLRALRQHPLLTATTEVLADAARYVAIMLVMLLLLGQLAKVAL*
Ga0075312_11320351	3300014254	Natural And Restored Wetlands	PLLVGTAEVLVDAVRYVAVMLIMLLLLGQLANVAL*
Ga0075318_11378712	3300014256	Natural And Restored Wetlands	MLKALRHHPLVVGTGEVLVDAARYVTIVLLVLLLMGQLAKVAL*
Ga0075311_10557632	3300014259	Natural And Restored Wetlands	MLKALRHHPLRVGTAEVLVDAARYVAIVLVVLLLMGQLAKVAL*
Ga0075309_10787982	3300014268	Natural And Restored Wetlands	MLKALRHHPLTSGTAEVLVDAVRYVAIVLVVLLLVGQLAKVAL*
Ga0075309_11122042	3300014268	Natural And Restored Wetlands	MLKALRHHPLLVGTVEVLVDAARYVAIVLVVLLLVGQLAKVAL*
Ga0075325_10872882	3300014270	Natural And Restored Wetlands	MLKALRHHPLLVGTAEMLVDAVRYVATVLVVLLLVGQLAKVAL*
Ga0075325_11555632	3300014270	Natural And Restored Wetlands	MLKALRHHPLLVGTVEMLVDAARYVAIVLVVLLLMGQLAKVAL*
Ga0075325_12083402	3300014270	Natural And Restored Wetlands	MLKALRHHPLLFGTAEVLVDAARYVAIVLAVLLLVGQLAKVAL*
Ga0075325_12220531	3300014270	Natural And Restored Wetlands	PLLVGTTEVLVDAVRYVAIVLVVLLLVGQLAKVAL*
Ga0075326_11015073	3300014271	Natural And Restored Wetlands	PRPLMVGTTEVLVDAARYVTIVLVVLLLLGQLAKVAL*
Ga0075326_13018542	3300014271	Natural And Restored Wetlands	MLKALRHRPLLAGTAEVLVDAARYVAIVLVVLLLVGQLAKVAL*
Ga0075326_13026701	3300014271	Natural And Restored Wetlands	PLMVGTAEVLLDAARYVTIVLIVIVLLGQLARVAL*
Ga0075327_11179572	3300014272	Natural And Restored Wetlands	MLKAPRHHPLLVGTAEVLVDAARYVAIVLVVLLLVGQLAKVAL*
Ga0075327_12550062	3300014272	Natural And Restored Wetlands	MRFMLKALRHHSVMVGTTELLVDAARYIAIVLIMLVLLGQLAKVAL*
Ga0075310_10761702	3300014302	Natural And Restored Wetlands	MWFMLKALRHHPLLVGTAGVLVDAARYVAIVLVVLLLVGHLAKVAL*
Ga0075331_10511012	3300014310	Natural And Restored Wetlands	MRFMLKALQHHPLLGGAVGMLADAASYVAIMLVVLLLLGQLARVAL*
Ga0075331_10593802	3300014310	Natural And Restored Wetlands	MLKALRHHPLMVGTAEVLVDAARYVAIVLVVLLLMGQLAKVAL*
Ga0075331_11777722	3300014310	Natural And Restored Wetlands	MLKALRHHPLLVGTAEMLVYATRYVAIVLVVLLLVGQLAKVAL*
Ga0075342_11354122	3300014320	Natural And Restored Wetlands	MLKALRHHPLVIGTGEVLVDAARYVTIVLLGQLAKVAL*
Ga0210076_10419222	3300025567	Natural And Restored Wetlands	MLKALRHHLLLAGTAEMLVDTARYVAIVLVVLLLVGQLAKVAL
Ga0210095_11618492	3300025568	Natural And Restored Wetlands	MLRTLRRLLPLVGMAEVLADAVRYVAIVLVVLIVLGQMIAALGS
Ga0210113_10134592	3300025796	Natural And Restored Wetlands	VLRTLLQRPLLVGTTEVLVDAVRYVAIVLVVLLLAGQLAKVAL
Ga0208419_10416962	3300026032	Natural And Restored Wetlands	VLRTLLQRPLLVGTTEVLVDAVRYVAIVLVVLLLVGQLAKVAL
Ga0208912_10341712	3300026090	Natural And Restored Wetlands	MLKALRHRPLLAGTAEVLVDAARYVAIVLVVLLLVGQLAKVAL
Ga0208291_10314643	3300026111	Natural And Restored Wetlands	MLKALRHHPLLVGTAGVLVDAARYVAIVLVVLLLVGQLAKVAF
Ga0256867_101793641	3300026535	Soil	MLRRHPLLLGAAEVVADAVRYVAITLVVLLLLGQAAKLAF
Ga0256867_102965622	3300026535	Soil	MLKALRHHPLLVGTTEVLADAVRYVAIVLVVLLLVGQLAKVAL
Ga0256867_102977052	3300026535	Soil	MLKALRHHPLIVGMVEVLVDAARYVAVVLVVLLLVGQLAKVAF
Ga0256867_103089571	3300026535	Soil	MLNALRQHPMVVGTAEVLVDAARYVAIMAVVLLLLGQL
Ga0214468_11864163	3300027647	Soil	MLKALRHHPLLFGTTELLIDAVRYIAIVLVALLLVGQLAKVAL
Ga0256866_12085702	3300027650	Soil	MLKALCHHPLMVGTAEVLVDAARYVAIVLVVLLLVGQLAKVAL
Ga0256864_10650132	3300027964	Soil	MLRVLRRHPLLVGIAEVLTDAARYVAIVLGVLLLLGQLPKVAF
Ga0256864_11377282	3300027964	Soil	MLKALRHHPLLVGMADVLADAVRYVAIVLGALVLLGQLAKVAF
Ga0256864_12380812	3300027964	Soil	SQEIRVMLKALRRHPLLVGMAEVLADTVRYVVIVLGALLLLGQLAKVAF
Ga0299907_101171004	3300030006	Soil	MPRALREHPLLIGMAEVLTDAVRYVGIVMSALVVLGQLARMAF
Ga0299907_101614262	3300030006	Soil	MLKALTHHPLIVGMVEVLVDAARYVAIVLLVLLLMGQLAKVAL
Ga0299907_101937412	3300030006	Soil	MLKALRHHLLLAGTAEMLVDTARYVAIVLVVLLLVGQLANVAL
Ga0299907_102773563	3300030006	Soil	MLRTLRQHPLLVGMAEVLADAVRYVAIVLGALLLLGQLAKAAF
Ga0299907_102799232	3300030006	Soil	KALCHHPLMVGTAEVLVDAARYVAIVLVVLLLVGQLAKVAL
Ga0299907_102855422	3300030006	Soil	MLKALCHHPLLAGTAEVLLDAARYVAIVLLVLLLVGQLAKVAL
Ga0299907_102963643	3300030006	Soil	MLKALCHHPLMVGTAEVLVDAARYVAIVLVVLLLAGQLAKVAL
Ga0299907_103698612	3300030006	Soil	MLRTLLQHPLLVGTAEALTDAARYIAITLGVLLLLGQFAKLAL
Ga0299907_104018542	3300030006	Soil	MLRTLRQHPLLAGMAEVVIDAARYIAIVLVVLLLLGQFAKLAF
Ga0299907_105137222	3300030006	Soil	MRHHPLMGGTAEVLIDAVRYVTIVLIALMLLGQLAKVAL
Ga0299907_105327042	3300030006	Soil	MLKALRHHPLLVGTAELIADALRYIAIVLVFIVLLGQLAKVAL
Ga0299907_106209412	3300030006	Soil	MLKALRDHPLLVDTAEVLVDAARYVALVLLVLLLLGQLAKVAL
Ga0299907_106608832	3300030006	Soil	MLKALRHRPLLVGTAEVLIDAVLYVAIVLVVLVLLGQLAKVAL
Ga0299907_106639843	3300030006	Soil	MLKALRHHPLLFGTTEVLIDAVRYIAIVLVALLLVGQLAKVAL
Ga0299907_107093452	3300030006	Soil	MLRVLRHHPLLVGMAEVLTDAARYIAITLVVLLLLGQFTKLAL
Ga0299907_107291471	3300030006	Soil	MLKALRHHPLMVGTAEVLAAAVRHVAIMLVFIVLLGHLAKVAL
Ga0299907_107591762	3300030006	Soil	MLKALRRHPLLVGMADVLADAVRYVAIVLGALVLLGQLVKVAL
Ga0299907_108022742	3300030006	Soil	MLKALRHHPLMVGTAEVLVDAARYVAIMLVVFLLLGQLAKVAL
Ga0299907_108377941	3300030006	Soil	LPLLVGIAEVLADAARYVAIVLVVLLALGEVAKVAL
Ga0299907_108456461	3300030006	Soil	MLKALRHHPLMVGTAELLVDAARYLAIVLVMLLLLGQLAQVAL
Ga0299907_110993282	3300030006	Soil	MLNALRQHPMVVGTAEVLVDAARYVAIMAVVLLLLGQLAKVAF
Ga0299907_112376662	3300030006	Soil	MLETLRQHPLLVGMAEVLADATRYVAIVLVVLVLLGQVVAALGS
Ga0299907_112410692	3300030006	Soil	MLKALRDRPLMVGTAEVLADAVRYVAIMLVVLLLLGQLAR
Ga0299907_113062611	3300030006	Soil	MLKALRDRPLMIGTAEVLADAVRYVAVLVVVLLLVGQLAKVAL
Ga0299907_113130722	3300030006	Soil	MLKALRHHPLLVGTAGVLVDAARYVAIVLVVLLLVGQLAKVAL
Ga0299907_113456092	3300030006	Soil	MLKTLRHHPMMVGTADVLVDAARYVTIVLVVLLLVGQVAKVAL
Ga0299906_1000605514	3300030606	Soil	MLSALRRHPLLVGMGQVLADAVRYVAIVLGVLLLLGQLPKVAF
Ga0299906_103433103	3300030606	Soil	MLKALRHHPLLVGTAEVLADGVRYVAIVVVVLLLVGQLAKVAL
Ga0299906_105398092	3300030606	Soil	MLKALRRHPLLVGMADVLADAVRYVAIVLGALVLLGQLAKVAF
Ga0299906_105799432	3300030606	Soil	MLRAPRHHPLLVGMAEVLTDAVRYVAIVLGALLVPGQLAKVAF
Ga0299906_111780382	3300030606	Soil	VLRTLLQHPLLVGTAEVLTDAVRYVAIVLGALLLLGQFAKLAL
Ga0299906_113543452	3300030606	Soil	MLRALRHHPLLVGTAELLVDAVRYVVIILGALLLLGQLVKVAL
Ga0268386_101046924	3300030619	Soil	MLKALRHYPLLAGTAEMLVDATRYVAIVLVVLLLVGQLAKVAL
Ga0268386_101360826	3300030619	Soil	MLRTLLQHPLLVGTAEVLTDAARYIAITLVVLLLLGQFAKLAL
Ga0268386_101473463	3300030619	Soil	MLKALRHHRLVTGTGEVLVDAARYVTIVLLVLLLVGQLATVAL
Ga0268386_101817472	3300030619	Soil	MLKALRHHPLLVGTAEVLVDAARYVAIVLVVLLLVGQLAKVGL
Ga0268386_103008262	3300030619	Soil	MLKALRHHPLMVGTVELLVDAARYLAIVLVMLLLLGQLAKVAL
Ga0268386_103544602	3300030619	Soil	MLRTLRHSPLLVGMAEVLADAVRYVAIVLVVLLALRQLAKVAF
Ga0268386_103554423	3300030619	Soil	MLKALRHRPLLVGTAEVLVDAARYVAIVLVVLLLMGQLAKVSL
Ga0268386_103616043	3300030619	Soil	MLKALRHHPVMVGTLEVLVDAARYVAIVLVVLLLVGQLVTVAL
Ga0268386_104177412	3300030619	Soil	MKALRHHPLLAGTTEVLVDAARYVAIVLLVLLLVGQLAKVAL
Ga0268386_105275702	3300030619	Soil	MLKALRHHPLLVGTAEVMADAVRYLAVMLIVLMLLGQFAKLAF
Ga0268386_107063252	3300030619	Soil	MLKALRHHPVMVGTAEVLVDAARYVAIVLVVLLLMGQLADVAL
Ga0268386_107103812	3300030619	Soil	MLKALRHHPLMVGTAELLVDAARYLAIVLIMLLLLGQLANVAL
Ga0268386_108132351	3300030619	Soil	DRHHQEMRFMLRTPLQHPLLVGTAEVLTDAARYIAITLGVLLLLGQFAKLAL
Ga0268386_109750561	3300030619	Soil	MLKALRHHPLMGGTAEVLIDAVRYVTIVLIALMLL
Ga0268386_110161072	3300030619	Soil	MLKALRDHPLLVDTAEVLVDAARYVALVLLVLLLLGQL
Ga0268386_110164332	3300030619	Soil	LRHHPLLVGTAEVLVDAARYVAIVLVVLLLMGQLAKVAL
Ga0302046_101506214	3300030620	Soil	VLRTLRQHPLLVGTAEVLTDAARYIAITPVVLLLLGQFAKLAL
Ga0302046_101748933	3300030620	Soil	MLKALRHHPLLVGTAELLVDAVRYVAIVVVVLLLVGQLAKVAL
Ga0302046_101843882	3300030620	Soil	MLRALREHPLLIGMAEVLTDAVRYVGIVMSALVVLGQLARMAF
Ga0302046_103580152	3300030620	Soil	MLRTLRRRPLLVGMAEVLTDAVRYVAIVLVALVVLGQLAKVAV
Ga0302046_103688672	3300030620	Soil	MLRTLRHHPLMVGTAEVLVDATRYVTIVLVMLLLLGQLKAAL
Ga0302046_103915521	3300030620	Soil	MLKALRHHPLLVGTAEVLVDAARYVTIVLVVLLLLGQLAKVAL
Ga0302046_104372252	3300030620	Soil	VLRTLLQHPLLVGTAEVLADAVRYVAVVLGALLLLGQFAKLAL
Ga0302046_105550772	3300030620	Soil	MLKAMCDHPLLVGTAEVMADAARYVAVVLIALLLLGQLAKVAL
Ga0302046_108393212	3300030620	Soil	MLKALRQHPMVVGTAEVLVDAARYVAIMAVVLLLLGQLAKVDF
Ga0302046_108882932	3300030620	Soil	VLRTLLQHPLLVGTAEVLTDAARYIAITLVVLLLLGQFAKLAL
Ga0299914_100318363	3300031228	Soil	MLRPLRHHPLTVGTAELLAAAVRYLAVMLVFIVLLGQLAKVAL
Ga0299914_100833113	3300031228	Soil	MLKALRHHPLLAGMAEVLVDAARYVAIVLIVLLLLGQFAKLAF
Ga0299914_100915752	3300031228	Soil	MLKALRDRPLVVGTAEVLVDAARYFAVMLVVFLLLGQLAKLAL
Ga0299914_101033994	3300031228	Soil	VRSWEIRFTLRALRQNPLLVGLTEVLADAVRYVAIVLVVSLLLAQLANVAL
Ga0299914_103190392	3300031228	Soil	MLKALRDHPLLVGTAEVLLDAVRYVTIVLLMLLLLGQAAKVAL
Ga0299914_104235322	3300031228	Soil	MLKALRHHPLIVGTAEVLVDAARYVAIMLVMFLLLGQLANVAL
Ga0299914_104991123	3300031228	Soil	MLKALRQHPLLAGTAEVLLDAARYVAIVLLVLLLVGQLAKVAL
Ga0299914_106028042	3300031228	Soil	MLKALRHHPLLAGTTEVLVDAARYVAIVLLVLLLVGQLAKVAL
Ga0299914_106139572	3300031228	Soil	MLKALSHHPVMVGTAEFLVDAARYVAIVLVVLLLVGQLAKVAL
Ga0299914_106179602	3300031228	Soil	MLRTLRQNPLLIGMSEVLLDAVRYVAIVLVVFVVLGQVVRLAALGS
Ga0299914_107737362	3300031228	Soil	MLKALRHHPLMVGTAEVLVEAARYIAIMAVVLLLLGQFAKLAF
Ga0299914_108824953	3300031228	Soil	MKALRPGPLMTGTAEVLVDAVRYVAIMLVFIVLLGQLAKVAL
Ga0299914_109107892	3300031228	Soil	MLRALCQHPLLVGMAEVLSDTVSYVAIVLAVLLLLGQVVAALGS
Ga0299914_109208842	3300031228	Soil	MLKALRHHPLMVGTTEVLAAAARYVAIMLVLIVLLGQLAKVAL
Ga0299914_109389512	3300031228	Soil	MLKTLRQHPVLVGMAEVLVDAVRYVAIVLVVLLLLGQVAAALGS
Ga0299914_112179272	3300031228	Soil	MLRTLRRQPLLIGMGEALTDAVRYVAIVLVVLAVLGQVVAALGS
Ga0299914_113563921	3300031228	Soil	LRHHRLLAGTAEMLVDATRYVAIVLVVLLLVGQLAKVAL
Ga0299914_114269912	3300031228	Soil	MLKARRHHALMVGTAAVLADAARYVAIVLVVLLLLGQLASVAL
Ga0299913_102105712	3300031229	Soil	MLRALRQNPLLVGLTEVLADAVRYVAIVLVVSLLLAQLANVAL
Ga0299913_103307982	3300031229	Soil	MLTTLRRYPLLVGMAEVLTDAVRYVAFVLGALLLLGQLAKVAF
Ga0299913_103310822	3300031229	Soil	MLKALRHHPLLFGTTEVLIDAVRYVAIVLVVLLLVGQLAKVAL
Ga0299913_104288243	3300031229	Soil	MLKALRHHPLLVGTAGVLVDAARYVAIVLVVLLLVG
Ga0299913_107400291	3300031229	Soil	MLRRHPLLLGAAEVVADAVRYVAITLVVLLLLGQAAKLA
Ga0299913_107479021	3300031229	Soil	MLRVLRHHPLLVGMAEVLTDAVRYVGIVLGALLLVGQLAKVAF
Ga0299913_108223182	3300031229	Soil	VLRTLLQHPLLAGTAEVLTDAARYIAITLVVLLLLGQFTKLAL
Ga0299913_108889141	3300031229	Soil	MLKALRQHPLMVGTAEVLLDAARYVTIVLIVIVLLGQLAGVAR
Ga0299913_108912422	3300031229	Soil	MLRTLHRHPLLVGMAEVLTDAVRYVAIVLGALLLLGQLAKAAF
Ga0299913_110803122	3300031229	Soil	MLKALRHHPLLVNMAEVLVAAVRYVAIMLVFIVLLGQPAKVAL
Ga0299913_111811231	3300031229	Soil	TLRRYPLLVGMAEVLTDAVRYVAIVLGVLLVLGQLAKVAL
Ga0299913_113010461	3300031229	Soil	MLKALRHHPLLAGTAEVLVDAARYVAIVLVVLLLVGQLAKVAL
Ga0299913_114083632	3300031229	Soil	MLRTLRQHPLLVGMAEVLADAVRYVAIVLIVLAVLGQVVAALGS
Ga0299913_115544931	3300031229	Soil	VLRARRQLPLLVGIAEVLADAARYVAIVLVVLLALGEVAKVAL
Ga0299913_116272111	3300031229	Soil	MLRTLRHSPLLVGMAEVLTDAIRYIAIALVALVVLAQLVKMIL
Ga0299913_117188732	3300031229	Soil	MLRALRHSPLLVGIAEVLTDAARYIAIVLVVLLLVGQLARVAL
Ga0299913_117516342	3300031229	Soil	MLKALRQHPLMIGTGEVLVDAARYVTIVLLVLLLMGQLATVAL
Ga0299913_118993881	3300031229	Soil	MLRALRRHPLLVGMAEVLTDGVRYVAIVLGALLLLGQLAKVAF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F047517

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences