3300002731: METATRANSCRIPTOMICS AND GENOMIC CONTEXT IN MICROBIAL COMMUNITIES INVOLVED IN THE BIOGEOCHEMICAL CYCLES IN MANGROVES

Overview

Basic Information

• IMG/M Taxon OID: 3300002731
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110149 | Gp0071981 | Ga0046460
• Sample Name: METATRANSCRIPTOMICS AND GENOMIC CONTEXT IN MICROBIAL COMMUNITIES INVOLVED IN THE BIOGEOCHEMICAL CYCLES IN MANGROVES
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 6375540
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Mangrove Soil Microbial Communities From Brazil, Analyzing Biochemical Cycles
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Sand → Unclassified → Mangrove Soil → Mangrove Soil Microbial Communities From Brazil, Analyzing Biochemical Cycles

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): mangrove biome → mangrove swamp → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: coast of the S?o Paulo state (Brazil)
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047517	Metagenome	149	Y
F054974	Metagenome	139	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
MGVB_100025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	33319
MGVB_100059	All Organisms → cellular organisms → Bacteria	30310

Sequences

Scaffold ID	Protein ID	Family	Sequence
MGVB_100025	MGVB_10002524	F047517	MLKVLRQHPVLIGMAEVLADAVRYVAIVLVVLVVLGQLVAALGS*
MGVB_100059	MGVB_10005911	F054974	MKSSQLSKSRFIVGIVLVVIAVLMFLFARGNYSTAGAIGIGVLGLISIAISRRR*