Scaffold JGI25156J39149_1000041

Overview

Basic Information

• Taxon OID: 3300002705
• Scaffold ID: JGI25156J39149_1000041
• Source Dataset Name: Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 106358
• Total Scaffold Genes: 117
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 77 (65.81%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Epiphytes → Unclassified → Arabidopsis Root → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Source Dataset Sampling Location

• Location Name: University of North Carolina, USA
• Coordinates
  • Lat. (^o): 35.9082
  • Long. (^o): -79.0499

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045820	Metagenome / Metatranscriptome	152	Y
F062395	Metagenome / Metatranscriptome	130	Y
F077376	Metagenome / Metatranscriptome	117	Y
F092337	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25156J39149_100004119	F077376	AGGA	MTTYVLSLTGDEEKAANATHWAKFRRAKLISVSRRADERMPDAGRDSIVIAEHGAGDRRATSCNPSTHDPAALAALLVRTLDIQDGTGVVLADFDNEEFAADVVARIADLGRRVTCTGQLRDFSFGARVRPLFARAA*
JGI25156J39149_100004137	F062395	GGAGG	LKRVVAGSHVHAETKTSFRYEATWHVEGPLLAWKAEVSLPGRRWALAGGTPEWTGGNEAKAVREDIARSIDGLEA*
JGI25156J39149_10000414	F092337	N/A	MRTTDSAMRSLRTATFTISIRDSSEDQLEAAAAAFTCTLHRAGMTPEDALLAWRRMDEWERRNFAADADPGPQWWRTMAIARDAVLAALRAAGLDGQRRPFMIEPATRPH*
JGI25156J39149_100004155	F045820	GAGG	MTANTSSPRRDDRTRDDLPDGRNGRVVGENDDNVLESIGKAVVAPVEGADEGAEPVDGQHGRAFVDLTRTLPQGQSATPRTPTAPKPGGKAL*