Metagenome / Metatranscriptome Family F062395

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F062395
Family Type	Metagenome / Metatranscriptome
Number of Sequences	130
Average Sequence Length	77 residues
Representative Sequence	LKRVVAGSHVHAETKTSFRYEATWHVEGPLLTWKAEVSLPGRRWALAGGTPEWTGGNEAKAVRDDIARSIDGLEA
Number of Associated Samples	102
Number of Associated Scaffolds	130

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	64.62 %
% of genes near scaffold ends (potentially truncated)	26.92 %
% of genes from short scaffolds (< 2000 bps)	67.69 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.75

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (76.154 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere (11.539 % of family members)
Environment Ontology (ENVO)	Unclassified (33.846 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (48.462 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 13.59% β-sheet: 35.92% Coil/Unstructured: 50.49%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.75
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.75
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
e.18.1.0: automated matches	d5aa5c_	5aa5	0.6536
e.43.1.1: Capz alpha-1 subunit	d3aa0a_	3aa0	0.64992
e.5.1.1: Heme-dependent catalases	d1m7sa_	1m7s	0.64553
f.4.1.1: Outer membrane protein	d1p4ta_	1p4t	0.63682
e.5.1.1: Heme-dependent catalases	d1gwea_	1gwe	0.63329

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 130 Family Scaffolds
PF01037	AsnC_trans_reg	22.31
PF13561	adh_short_C2	17.69
PF13412	HTH_24	10.00
PF00106	adh_short	7.69
PF14696	Glyoxalase_5	5.38
PF00583	Acetyltransf_1	3.85
PF07690	MFS_1	3.85
PF00072	Response_reg	3.08
PF00571	CBS	1.54
PF03466	LysR_substrate	1.54
PF04828	GFA	1.54
PF00155	Aminotran_1_2	1.54
PF00196	GerE	1.54
PF00126	HTH_1	0.77
PF01244	Peptidase_M19	0.77
PF01266	DAO	0.77
PF13404	HTH_AsnC-type	0.77
PF13511	DUF4124	0.77
PF00990	GGDEF	0.77
PF00166	Cpn10	0.77
PF08448	PAS_4	0.77
PF00528	BPD_transp_1	0.77
PF07715	Plug	0.77
PF05598	DUF772	0.77
PF02627	CMD	0.77
PF01925	TauE	0.77

COG ID	Name	Functional Category	% Frequency in 130 Family Scaffolds
COG3791	Uncharacterized conserved protein	Function unknown [S]	1.54
COG0234	Co-chaperonin GroES (HSP10)	Posttranslational modification, protein turnover, chaperones [O]	0.77
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.77
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	0.77
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.77
COG2355	Zn-dependent dipeptidase, microsomal dipeptidase homolog	Posttranslational modification, protein turnover, chaperones [O]	0.77

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	76.15 %
Unclassified	root	N/A	23.85 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	76.15 %
Unclassified	root	N/A	23.85 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	76.15 %
Unclassified	root	N/A	23.85 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	61.54 %
Unclassified	root	N/A	23.85 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	46.15 %
Unclassified	root	N/A	23.85 %

Name	Rank	Taxonomy	Distribution
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	44.62 %
Unclassified	root	N/A	23.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.85 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	8.46 %
Burkholderiales genera incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis	2.31 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.77 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.85 %
Rhizobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rhizobacter	2.31 %
Polaromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Polaromonas	0.77 %
Undibacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Undibacterium	0.77 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	0.77 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.85 %
unclassified Rhizobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rhizobacter → unclassified Rhizobacter	2.31 %
unclassified Burkholderia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → unclassified Burkholderia	0.77 %
unclassified Polaromonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Polaromonas → unclassified Polaromonas	0.77 %
Undibacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Undibacterium	0.77 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.85 %
Rhizobacter sp. Root1221	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rhizobacter → unclassified Rhizobacter → Rhizobacter sp. Root1221	2.31 %
Polaromonas sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Polaromonas → unclassified Polaromonas → Polaromonas sp.	0.77 %
Burkholderia sp. Bp8963	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → unclassified Burkholderia → Burkholderia sp. Bp8963	0.77 %
Undibacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Undibacterium	0.77 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	0.77 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002705\|JGI25156J39149_1000041	All Organisms → cellular organisms → Bacteria → Proteobacteria	106358	Open in IMG/M
3300002705\|JGI25156J39149_1009141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2433	Open in IMG/M
3300003316\|rootH1_10002643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	9816	Open in IMG/M
3300003316\|rootH1_10008654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3946	Open in IMG/M
3300003320\|rootH2_10034868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	8321	Open in IMG/M
3300003323\|rootH1_10087604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2912	Open in IMG/M
3300003752\|Ga0055539_1000291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	27701	Open in IMG/M
3300003752\|Ga0055539_1002559	All Organisms → cellular organisms → Bacteria → Proteobacteria	2730	Open in IMG/M
3300004153\|Ga0063455_100713899	Not Available	677	Open in IMG/M
3300005327\|Ga0070658_10039983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3783	Open in IMG/M
3300005327\|Ga0070658_10059196	All Organisms → cellular organisms → Bacteria → Proteobacteria	3119	Open in IMG/M
3300005327\|Ga0070658_10145061	All Organisms → cellular organisms → Bacteria → Proteobacteria	1985	Open in IMG/M
3300005327\|Ga0070658_11130558	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	681	Open in IMG/M
3300005330\|Ga0070690_100024250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3729	Open in IMG/M
3300005337\|Ga0070682_101714600	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300005339\|Ga0070660_100272779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rhizobacter → unclassified Rhizobacter → Rhizobacter sp. Root1221	1383	Open in IMG/M
3300005340\|Ga0070689_100932688	All Organisms → cellular organisms → Bacteria	769	Open in IMG/M
3300005347\|Ga0070668_101532959	Not Available	610	Open in IMG/M
3300005354\|Ga0070675_100616464	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	985	Open in IMG/M
3300005364\|Ga0070673_100005009	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	8448	Open in IMG/M
3300005365\|Ga0070688_100634105	All Organisms → cellular organisms → Bacteria → Proteobacteria	821	Open in IMG/M
3300005366\|Ga0070659_100705816	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rhizobacter → unclassified Rhizobacter → Rhizobacter sp. Root1221	872	Open in IMG/M
3300005366\|Ga0070659_101194324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	673	Open in IMG/M
3300005455\|Ga0070663_100831366	All Organisms → cellular organisms → Bacteria → Proteobacteria	794	Open in IMG/M
3300005459\|Ga0068867_100697360	Not Available	896	Open in IMG/M
3300005513\|Ga0077120_1041553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2820	Open in IMG/M
3300005513\|Ga0077120_1073837	All Organisms → cellular organisms → Bacteria → Proteobacteria	1662	Open in IMG/M
3300005519\|Ga0077119_10037987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3610	Open in IMG/M
3300005519\|Ga0077119_10046228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3064	Open in IMG/M
3300005519\|Ga0077119_10055752	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2619	Open in IMG/M
3300005519\|Ga0077119_10207605	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	844	Open in IMG/M
3300005543\|Ga0070672_101470740	All Organisms → cellular organisms → Bacteria → Proteobacteria	610	Open in IMG/M
3300005563\|Ga0068855_100019535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	8140	Open in IMG/M
3300005563\|Ga0068855_100258368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1941	Open in IMG/M
3300005614\|Ga0068856_100066649	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3557	Open in IMG/M
3300005719\|Ga0068861_100006476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	7978	Open in IMG/M
3300009093\|Ga0105240_11453507	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300009174\|Ga0105241_12546455	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300009500\|Ga0116229_10514672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	990	Open in IMG/M
3300009551\|Ga0105238_11306253	All Organisms → cellular organisms → Bacteria	751	Open in IMG/M
3300009551\|Ga0105238_11604018	All Organisms → cellular organisms → Bacteria → Proteobacteria	681	Open in IMG/M
3300009627\|Ga0116109_1019599	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1149	Open in IMG/M
3300009709\|Ga0116227_10350293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1128	Open in IMG/M
3300009787\|Ga0116226_10170666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2263	Open in IMG/M
3300009787\|Ga0116226_11887080	Not Available	544	Open in IMG/M
3300010152\|Ga0126318_10321282	All Organisms → cellular organisms → Bacteria	968	Open in IMG/M
3300010869\|Ga0126359_1006356	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300010877\|Ga0126356_11427007	Not Available	534	Open in IMG/M
3300013006\|Ga0164294_10734117	Not Available	666	Open in IMG/M
3300013296\|Ga0157374_10517344	Not Available	1199	Open in IMG/M
3300013306\|Ga0163162_11432078	Not Available	786	Open in IMG/M
3300015202\|Ga0167663_1037812	All Organisms → cellular organisms → Bacteria	1820	Open in IMG/M
3300015202\|Ga0167663_1044848	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1574	Open in IMG/M
3300015262\|Ga0182007_10412312	Not Available	516	Open in IMG/M
3300018414\|Ga0194135_11010321	Not Available	526	Open in IMG/M
3300021178\|Ga0210408_10060020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2971	Open in IMG/M
3300021403\|Ga0210397_10200427	All Organisms → cellular organisms → Bacteria	1426	Open in IMG/M
3300021404\|Ga0210389_11275008	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300021405\|Ga0210387_11217466	Not Available	653	Open in IMG/M
3300021432\|Ga0210384_10001396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	32953	Open in IMG/M
3300021475\|Ga0210392_10467149	All Organisms → cellular organisms → Bacteria	927	Open in IMG/M
3300021475\|Ga0210392_11063885	Not Available	606	Open in IMG/M
3300022561\|Ga0212090_10267799	All Organisms → cellular organisms → Bacteria → Proteobacteria	1361	Open in IMG/M
3300022870\|Ga0247782_1005845	All Organisms → cellular organisms → Bacteria → Proteobacteria	1618	Open in IMG/M
3300022908\|Ga0247779_1007827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	3678	Open in IMG/M
3300025226\|Ga0209674_100231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	49462	Open in IMG/M
3300025228\|Ga0209672_114842	Not Available	889	Open in IMG/M
3300025242\|Ga0209258_100025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	534777	Open in IMG/M
3300025242\|Ga0209258_101203	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	10244	Open in IMG/M
3300025253\|Ga0209677_100269	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	35129	Open in IMG/M
3300025254\|Ga0209148_1002541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	6088	Open in IMG/M
3300025256\|Ga0209759_1050409	Not Available	645	Open in IMG/M
3300025256\|Ga0209759_1055006	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300025909\|Ga0207705_10108210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2052	Open in IMG/M
3300025909\|Ga0207705_10250466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1351	Open in IMG/M
3300025909\|Ga0207705_10369267	All Organisms → cellular organisms → Bacteria → Proteobacteria	1107	Open in IMG/M
3300025913\|Ga0207695_10017761	All Organisms → cellular organisms → Bacteria → Proteobacteria	8256	Open in IMG/M
3300025913\|Ga0207695_10156126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2216	Open in IMG/M
3300025926\|Ga0207659_11686866	Not Available	540	Open in IMG/M
3300025932\|Ga0207690_10695852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	835	Open in IMG/M
3300025932\|Ga0207690_10804566	All Organisms → cellular organisms → Bacteria → Proteobacteria	777	Open in IMG/M
3300025932\|Ga0207690_11593220	Not Available	546	Open in IMG/M
3300025949\|Ga0207667_10017087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	8180	Open in IMG/M
3300025960\|Ga0207651_10000937	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	12855	Open in IMG/M
3300026067\|Ga0207678_10100684	All Organisms → cellular organisms → Bacteria	2468	Open in IMG/M
3300026116\|Ga0207674_11434261	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300026118\|Ga0207675_100045476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	4101	Open in IMG/M
3300026142\|Ga0207698_10367158	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1365	Open in IMG/M
3300027817\|Ga0209112_10027396	All Organisms → cellular organisms → Bacteria	1675	Open in IMG/M
3300028562\|Ga0302151_10209388	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300028666\|Ga0265336_10000014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	241247	Open in IMG/M
3300028732\|Ga0302264_1077909	Not Available	782	Open in IMG/M
3300028762\|Ga0302202_10518063	Not Available	536	Open in IMG/M
3300028765\|Ga0302198_10033493	Not Available	3378	Open in IMG/M
3300028794\|Ga0307515_10787652	Not Available	572	Open in IMG/M
3300028813\|Ga0302157_10090029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1962	Open in IMG/M
3300028813\|Ga0302157_10732761	Not Available	502	Open in IMG/M
3300028865\|Ga0302291_10309815	Not Available	543	Open in IMG/M
3300028882\|Ga0302154_10629843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Polaromonas → unclassified Polaromonas → Polaromonas sp.	503	Open in IMG/M
3300029896\|Ga0247044_1029989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1442	Open in IMG/M
3300029907\|Ga0311329_10320765	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1116	Open in IMG/M
3300029911\|Ga0311361_11483670	Not Available	513	Open in IMG/M
3300029951\|Ga0311371_10004134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	30976	Open in IMG/M
3300029984\|Ga0311332_11341829	Not Available	578	Open in IMG/M
3300029989\|Ga0311365_10117953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Undibacterium	2273	Open in IMG/M
3300029989\|Ga0311365_10344385	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1288	Open in IMG/M
3300030010\|Ga0302299_10645376	Not Available	522	Open in IMG/M
3300030114\|Ga0311333_10385482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1131	Open in IMG/M
3300030225\|Ga0302196_10073825	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	2073	Open in IMG/M
3300030520\|Ga0311372_10641137	All Organisms → cellular organisms → Bacteria → Proteobacteria	1503	Open in IMG/M
3300030521\|Ga0307511_10151465	All Organisms → cellular organisms → Bacteria → Proteobacteria	1330	Open in IMG/M
3300030524\|Ga0311357_11284075	Not Available	629	Open in IMG/M
3300030677\|Ga0302317_10216447	All Organisms → cellular organisms → Bacteria → Proteobacteria	875	Open in IMG/M
3300030943\|Ga0311366_11772139	Not Available	527	Open in IMG/M
3300031232\|Ga0302323_101031284	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rhizobacter → unclassified Rhizobacter → Rhizobacter sp. Root1221	915	Open in IMG/M
3300031232\|Ga0302323_101331522	Not Available	805	Open in IMG/M
3300031507\|Ga0307509_10924179	All Organisms → cellular organisms → Bacteria → Proteobacteria	538	Open in IMG/M
3300031521\|Ga0311364_10280060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → unclassified Burkholderia → Burkholderia sp. Bp8963	1701	Open in IMG/M
3300031616\|Ga0307508_10870225	Not Available	524	Open in IMG/M
3300031716\|Ga0310813_10018409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	4715	Open in IMG/M
3300031726\|Ga0302321_103053803	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300031730\|Ga0307516_10002952	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	22263	Open in IMG/M
3300031890\|Ga0306925_11012502	All Organisms → cellular organisms → Bacteria → Proteobacteria	846	Open in IMG/M
3300031938\|Ga0308175_100705938	All Organisms → cellular organisms → Bacteria	1096	Open in IMG/M
3300031938\|Ga0308175_102938449	Not Available	531	Open in IMG/M
3300031996\|Ga0308176_12390523	Not Available	564	Open in IMG/M
3300032074\|Ga0308173_10933871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	804	Open in IMG/M
3300032074\|Ga0308173_11643560	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300032954\|Ga0335083_10463410	All Organisms → cellular organisms → Bacteria → Proteobacteria	1068	Open in IMG/M
3300034820\|Ga0373959_0073104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	778	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	55.38%
Environmental	Environmental	44.62%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	55.38%
Terrestrial	Environmental → Terrestrial	40.00%
Aquatic	Environmental → Aquatic	4.62%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	23.85%
Soil	Environmental → Terrestrial → Soil	19.23%
Peat	Environmental → Terrestrial → Peat	19.23%
Roots	Host-Associated → Plants → Roots	16.15%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.23%
Freshwater	Environmental → Aquatic → Freshwater	4.62%
Rhizome	Host-Associated → Plants → Rhizome	3.08%
Peat Moss	Host-Associated → Plants → Peat Moss	3.08%
Plant Litter	Environmental → Terrestrial → Plant Litter	1.54%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified	19.23%
Soil	Host-Associated → Plants → Rhizosphere → Soil	17.69%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	13.85%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.23%
Endophytes	Host-Associated → Plants → Roots → Endophytes	6.15%
Epiphytes	Host-Associated → Plants → Roots → Epiphytes	6.15%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.15%
Loam	Environmental → Terrestrial → Soil → Loam	4.62%
Unclassified	Host-Associated → Plants → Roots → Unclassified	3.85%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified	3.08%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	3.08%
Ice	Environmental → Aquatic → Freshwater → Ice	1.54%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	1.54%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.77%
Lake	Environmental → Aquatic → Freshwater → Lake	0.77%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.77%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.77%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	19.23%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	17.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.23%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.15%
Unclassified	Host-Associated → Plants → Roots → Endophytes → Unclassified	6.15%
Unclassified	Host-Associated → Plants → Roots → Epiphytes → Unclassified	6.15%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.15%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	3.85%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.85%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	3.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.08%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified → Unclassified	3.08%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	3.08%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	1.54%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.77%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.77%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.77%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.77%
Glacier	Environmental → Aquatic → Freshwater → Ice → Glacier	0.77%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.77%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.77%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.77%

Habitat	Taxonomy	Distribution
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	11.54%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	9.23%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	6.92%
Arabidopsis Root	Host-Associated → Plants → Roots → Endophytes → Unclassified → Arabidopsis Root	6.15%
Arabidopsis Root	Host-Associated → Plants → Roots → Epiphytes → Unclassified → Arabidopsis Root	6.15%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.38%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.62%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	4.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.85%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	3.85%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.08%
Sugarcane Root And Bulk Soil	Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil	3.08%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	3.08%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.31%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.31%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.31%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	1.54%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	1.54%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.54%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	1.54%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	1.54%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.77%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.77%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.77%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.77%
Glacier Valley	Environmental → Aquatic → Freshwater → Ice → Glacier → Glacier Valley	0.77%
Cryconite	Environmental → Aquatic → Freshwater → Ice → Unclassified → Cryconite	0.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.77%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.77%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.77%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.77%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.77%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.77%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.77%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002705	Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS	Host-Associated	Open in IMG/M
3300003316	Sugarcane root Sample L1	Host-Associated	Open in IMG/M
3300003320	Sugarcane root Sample H2	Host-Associated	Open in IMG/M
3300003323	Sugarcane root Sample H1	Host-Associated	Open in IMG/M
3300003752	Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2	Host-Associated	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005513	Combined assembly of arab plate scrape CL_Cvi (Combined Assembly)	Host-Associated	Open in IMG/M
3300005519	Combined assembly of arab plate scrape CL_Col (Combined Assembly)	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009500	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009627	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_10	Environmental	Open in IMG/M
3300009709	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009787	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fa - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300010152	Soil microbial communities from Oklahoma, USA to study soil gas exchange rates - GP-OK-ARM metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010869	Boreal forest soil eukaryotic communities from Alaska, USA - W4-4 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010877	Boreal forest soil eukaryotic communities from Alaska, USA - W3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300013006	Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015202	Arctic sediment microbial communities from supraglacial cryoconite, Storglaci?ren, Tarfala, Sweden (Sample st-12a, ablation zone cryoconite)	Environmental	Open in IMG/M
3300015262	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG	Host-Associated	Open in IMG/M
3300018414	Freshwater sediment microbial communities in response to fracking from North America - Little Laurel Run_MetaG_LLRF_2013	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300022561	Borup_combined assembly	Environmental	Open in IMG/M
3300022870	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L019-104C-5	Environmental	Open in IMG/M
3300022908	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L221-509R-5	Environmental	Open in IMG/M
3300025226	Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes)	Host-Associated	Open in IMG/M
3300025228	Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes)	Host-Associated	Open in IMG/M
3300025242	Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes)	Host-Associated	Open in IMG/M
3300025253	Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes)	Host-Associated	Open in IMG/M
3300025254	Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes)	Host-Associated	Open in IMG/M
3300025256	Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes)	Host-Associated	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027817	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300028562	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_3	Environmental	Open in IMG/M
3300028666	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG	Host-Associated	Open in IMG/M
3300028732	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_N3_4	Environmental	Open in IMG/M
3300028762	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_3	Environmental	Open in IMG/M
3300028765	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_2	Environmental	Open in IMG/M
3300028794	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM	Host-Associated	Open in IMG/M
3300028813	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_3	Environmental	Open in IMG/M
3300028865	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N1_4	Environmental	Open in IMG/M
3300028882	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_3	Environmental	Open in IMG/M
3300029896	Cryconite microbial communities from ice sheet in Tasiilaq, Greenland - TAS_L-C3b	Environmental	Open in IMG/M
3300029907	I_Bog_N1 coassembly	Environmental	Open in IMG/M
3300029911	III_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300029984	I_Fen_E1 coassembly	Environmental	Open in IMG/M
3300029989	III_Fen_N1 coassembly	Environmental	Open in IMG/M
3300030010	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N3_4	Environmental	Open in IMG/M
3300030114	I_Fen_E2 coassembly	Environmental	Open in IMG/M
3300030225	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N1_3	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030521	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM	Host-Associated	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030677	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_3	Environmental	Open in IMG/M
3300030943	III_Fen_N2 coassembly	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031507	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM	Host-Associated	Open in IMG/M
3300031521	III_Fen_E2 coassembly	Environmental	Open in IMG/M
3300031616	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM	Host-Associated	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031730	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM	Host-Associated	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300034820	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25156J39149_100004137	3300002705	Arabidopsis Root	LKRVVAGSHVHAETKTSFRYEATWHVEGPLLAWKAEVSLPGRRWALAGGTPEWTGGNEAKAVREDIARSIDGLEA*
JGI25156J39149_10091414	3300002705	Arabidopsis Root	MKRVPAPAPAKRVVASSHVHSESRTSFRYEATWHIDGPLLTWKATVSLPGRRWCLAGGTPEWTGGNEAKAVRDDVARSIDGLET*
rootH1_1000264314	3300003316	Sugarcane Root And Bulk Soil	LKRVVAGSHVHAETKTSFRYEAHWHVEGRLLTWKAQVSLPGRLWSLAGGTPEWTGGNEVKAVREDIARSIDGLEA*
rootH1_100086544	3300003316	Sugarcane Root And Bulk Soil	LKRVVAGSHVHAETKTSFRYEAHWHVQGRLLTWKAQVSLPGRLWSLAGGTPEWTGGNEAKAVREDIARSIDGLEA*
rootH2_100348684	3300003320	Sugarcane Root And Bulk Soil	LKRVVAGSHVHAETKTSFRYEATWHVEGQLLAWKAKVSLPGRRWALAGGTPEWTGGNEAKAVREDIARSIDGLEA*
rootH1_100876041	3300003323	Sugarcane Root And Bulk Soil	LKRVVAGSHVHAETKTSFRYEATWHVDGPLLAWKAKVSLPGRRWALAGGTPEWTGGNEAKAVREDIARSIDGLEA*
Ga0055539_100029125	3300003752	Arabidopsis Root	LKRVVAGSHVHAETKTSFRYEAHWHVEGRLLTWKAQVSLPGRLWSLAGGTPEWTGGNEVKAVREDIARSIDGLQA*
Ga0055539_10025593	3300003752	Arabidopsis Root	LKRVVAGSHVHAETKTSFRYEATWHVEGPLLAWKAEVSLSGRRWALAGGTPEWTGGNEAKAVREDIARSIDGLEA*
Ga0063455_1007138991	3300004153	Soil	LKRVVAGSHVHAETKTSFRYEATWHVEGPLLAWKAEVSLPGRRWALAGGTPEWTGGNEAKAVRDDIARSIDGLEA*
Ga0070658_100399832	3300005327	Corn Rhizosphere	LKRVVASSHVHAPTKTSLRYEATWRVEGPLLTWQATVSLPGRRWSLAGGMPQWGGGSEAEAVREDIGRSIDGLELTS*
Ga0070658_100591965	3300005327	Corn Rhizosphere	LKRVVAGSHVHAETKTSFRYEATWHVEGPLLAWQAEVSLPGRRWALAGGTPEWTGGNEAKAVRDDIARSIDGLQA*
Ga0070658_101450612	3300005327	Corn Rhizosphere	VKRVVASSHVHAQTKTAFAYEATWHVEGTLLTWKATVSLPGRSWNLAGGMPHGGGGGEAEAVREDVGRSIDGLICLPARSRGVHPR*
Ga0070658_111305582	3300005327	Corn Rhizosphere	VKRVVASSHVHAQTKTSFRYEATWHVEGPLLTWKATVSLPGRVWSLAGGMPHGARGSEAAAVREDIGRSIDGLEIAGSRLER*
Ga0070690_1000242505	3300005330	Switchgrass Rhizosphere	LKRVVAGSHVHAETKTSFRYEATWRVDGPLLAWKAKVSLPGRRWALAGGTPEWTGGNEVKAVREDIARSIDGLEA*
Ga0070682_1017146002	3300005337	Corn Rhizosphere	HQGEARDLKRVVAGSHVHAETKTSFRYEATWHVEGPLLAWKAEVSLPGRRWALAGGTPEWTGGNEAKAVRDDIARSIDGLEA*
Ga0070660_1002727792	3300005339	Corn Rhizosphere	LKRVVAGSHVHAETKTSFRYEATWHVEGPLLAWKAEVSLPGRRWALAGGTPEWTGGNEAKAVRDDIARSIDGLQA*
Ga0070689_1009326881	3300005340	Switchgrass Rhizosphere	DLKRVVAGSHVHAETKTSFRYEATWRVDGPLLAWKAKVSLPGRRWALAGGTPEWTGGNEVKAVREDIARSIDGLEA*
Ga0070668_1015329592	3300005347	Switchgrass Rhizosphere	RVVAGSHVHAETKTSFRYEATWHVEGPLLAWKAEVSLPGRRWALAGGTPEWTGGNEVKAVRDDIARSIDGLQA*
Ga0070675_1006164641	3300005354	Miscanthus Rhizosphere	PLGWPTHQGEASDLKRVVAGSHVHAETKTSFRYEATWHVEGPLLAWKAEVSLPGRRWALAGGTPEWTGGNEVKAVRDDIARSIDGLQA*
Ga0070673_1000050093	3300005364	Switchgrass Rhizosphere	VKRVVASSHVHAQTKTSFRYEATWRVEGPLLTWKATVSLPGRRWSLAGGMPHWGGGSEAEAVREDVGRSIDGLEIV*
Ga0070688_1006341051	3300005365	Switchgrass Rhizosphere	LKRVVAGSHVHAETKTSFRYEATWHVEGPLLAWKAEVSLPGRRWALAGGTPEWSGGNEAKAVREDIARSIDGLEA*
Ga0070659_1007058162	3300005366	Corn Rhizosphere	LKRVVAGSHVHAETKTSFRYEATWHVEGPLLAWKAEVSLPGRRWALAGGTPEWTGGNEVKAVRDDIARSIDGLQA*
Ga0070659_1011943242	3300005366	Corn Rhizosphere	LKRVVASSHVHTQTKTSLRYEATWHVEGPLLTWKATVSLPGRRWSLAGGMPQWGGGSEAEAVREDIGRSIDGLELTS*
Ga0070663_1008313661	3300005455	Corn Rhizosphere	LKRVVAGSHVHAETKTSFRYEATWHVEGPLLAWKAEVSLPGRRWALVGGTPEWTGGNEAKAVR
Ga0068867_1006973602	3300005459	Miscanthus Rhizosphere	LKRVVASSHVHAETKTPFRYEATWHVDGTLLTWKAEVSLPGRRWSLAGGTPQWAGGNEAEAVREDVARSIDGLEA*
Ga0077120_10415532	3300005513	Arabidopsis Rhizosphere	LKRVVAGSHVHAETKTSFRYEATWHVEGPLLAWKAKVSLPGRKWALAGGTPEWTGGNEAKAVRDDIARSIDGLEA*
Ga0077120_10738371	3300005513	Arabidopsis Rhizosphere	LKRVVASSHVHAQTKTSLRYEATWRVEGALLTWQATVSLPGRRWSLAGGMPQWGGGSEAEAVREDVGRSIDGLELTN*
Ga0077119_100379873	3300005519	Arabidopsis Root	VKRVVASSHVHAQTKTSLRYEATWHVEGPLLTWKATVSLPGRRWSLAGGMPQWGGGSEAEAVREDIGRSIDGLELTP*
Ga0077119_100462283	3300005519	Arabidopsis Root	VKRVVASSHVHAQTKTAFAYEATWHVEGPLLTWKATVSLPGRSWNLAGGMPHGGGGEAAAVQEDIGRSIDGLICHPARSRRIHPR*
Ga0077119_100557523	3300005519	Arabidopsis Root	LKRVVASSHVHAETKTAFRYEATWHVDGTLLTWKAEVSLPGRRWSLAGGTPEWTGGSEAEAVREDVARSIDGLEA*
Ga0077119_102076052	3300005519	Arabidopsis Root	LKRVVASSHVHAQTKTSFRYEATWHVDGPLLTWQAEVSLPGRRWSLAGGTPEWAGGSELEAVREDIARSIDGLEA*
Ga0070672_1014707402	3300005543	Miscanthus Rhizosphere	LKRVVASSHVHAETKTPFRYEATWRVDGTLLTWKAEVSLPGRRWSLAGGTPQWAGGSEAEAVREDVARSIDGLEA*
Ga0068855_1000195353	3300005563	Corn Rhizosphere	LKRVVAGSHVHAETKTSFRYEATWHVEGPLLAWKARVSLPGRRWALAGGTPEWTGGNEAKAVRDDIARSIDGLEA*
Ga0068855_1002583681	3300005563	Corn Rhizosphere	DLKRVVAGSHVHAETKTSFRYEATWHVEGPLLAWKAEVSLPGRRWALAGGTPEWTGGNEAKAVREDIARSIDGLEA*
Ga0068856_1000666495	3300005614	Corn Rhizosphere	HPAEARDLKRVVAGSHVHAETKTSFRYEATWHVEGPLLAWKAEVSLPGRRWALAGGTPEWTGGNEAKAVREDIARSIDGLEA*
Ga0068861_10000647610	3300005719	Switchgrass Rhizosphere	TKTSFRYEATWRVDGPLLAWKAKVSLPGRRWALAGGTPEWTGGNEVKAVREDIARSIDGLEA*
Ga0105240_114535071	3300009093	Corn Rhizosphere	VKRVVASSHVHAPTKTSLRYEATWRVEGPLLTWQATVSLPGRRWSLAGGMPQWGGGSEAEAVREDIGRSIDGLELTS*
Ga0105241_125464552	3300009174	Corn Rhizosphere	PAEARDLKRVVAGSHVHAETKTSFRYEATWHVEGPLLAWKAEVSLPGRRWALAGGTPEWTGGNEVKAVREDIARSIDGLEA*
Ga0116229_105146721	3300009500	Host-Associated	MKRVASSHVHAETKTSFRYEATWHVEGPLLTWKAAVSLPGRRWSLAGGTPEWTAGGEAKAVQDDIARSIDGLEA*
Ga0105238_113062532	3300009551	Corn Rhizosphere	TKTSFRYEATWHVEGPLLAWKAEVSLPGRRWALAGGTPEWSGGNEAKAVREDIARSIDGLEA*
Ga0105238_116040182	3300009551	Corn Rhizosphere	LKRVVASSHVHASTKTSLRYEATWRVEGPLLTWQATVSLPGRRWSLAGGMPQWGGGSEAEAVREDIGRSIDGLELTS*
Ga0116109_10195992	3300009627	Peatland	MVLKGSMPPATIKRMKRVASSHVHAETKTSFRYEATWHVEGPLLTWKAAVSLPGRRWSLTGGTPEWTAGGEAKAVQDDIARSIDGLEA*
Ga0116227_103502932	3300009709	Host-Associated	MVLKRSMPPATIKRMKRVASSHVHAETKTSFRYEATWHVEGPLLTWKAAVSLPGRRWSLTGGTPEWTAGGEAKAVQDDIARSIDGLEA*
Ga0116226_101706663	3300009787	Host-Associated	MPPATIDRMKRMKRLASSHVHAETKTSFRYEATWHVEGPLLTWKAAVSLPGRRWSLAGGTPEWTAGAEAKAVQDDIARSIDGLEA*
Ga0116226_118870801	3300009787	Host-Associated	ASSHVHAETKTSFRYEATWHVEGPLLTWKAAVSLPGRRWSLAGGTPEWTAGSEAKAVQDDIARSIDGLEA*
Ga0126318_103212821	3300010152	Soil	KTSFRYEATWHVEGPLLAWKAEVSLPGRRWALAGGTPEWTGGNEAKAVREDIARSIDGLEA*
Ga0126359_10063562	3300010869	Boreal Forest Soil	MKRVVASSHVHAETKTSFRYEATWHVDGPLLTWKATVSLPGRRWSLAGGTPQWTGGSEAEAVREDVARSIDGLEVS*
Ga0126356_114270072	3300010877	Boreal Forest Soil	MKRVVASSHVHAETKTSFRYEATWHVEGSLLTWKATVTLPGRRWSLAGGTPEWTGGGEAKAVQDDIARSIDGLQA*
Ga0164294_107341172	3300013006	Freshwater	VHSETKAVVRYEATWDVEGPLLTWKATASMRGRQWSLAGGRPEWQGGNEARAVQDDVARSIDGIDASALAATPRPN
Ga0157374_105173442	3300013296	Miscanthus Rhizosphere	LKRVVASSHVHAPTKTSLRYEATWRVEGPLLTWQATVSLPGRRCSLAGGMPQWGGGSEAEAVREDIGRSIDGLELTS*
Ga0163162_114320782	3300013306	Switchgrass Rhizosphere	LKRVVAGSHVHAETKTSFRYEATWHVEGPLLAWKAEISLPGRRWALAGGTPEWTGGNEAKAVRDDIARSIDGLEA*
Ga0167663_10378124	3300015202	Glacier Forefield Soil	VKRVHSPAATPAVHAPAKRVVASSHVHSESRTSFRFEATWHIDGPLLTWKAAVSLPGKRWNLAGGTPEWQGGSEDQAVREDVGRSIDGLEA*
Ga0167663_10448481	3300015202	Glacier Forefield Soil	VPRVVASSHVHAETRTSFRYEATWDIEGPLLTWKAKVSLPGRRWSLAGGTPEWTGGNEAKAVRDDVARSIDGLQA*
Ga0182007_104123122	3300015262	Rhizosphere	VKRVVASSHVHAQTKSSFRYEAAWRLEGRALIWTAQVSRSGRRWHLAGGTPEWTGGDELQAVCRDIARSIDGLEA*
Ga0194135_110103211	3300018414	Watersheds	VKRVVASSHVHAETKTSFRYEATWHIEGPLLTWKAEVTLPGRRWSLAGGTPEWTGGSEAKAVRDDVGRSIDGLEVA
Ga0210408_100600202	3300021178	Soil	LKRVPAPAPAKRVVASSHVHSESRTSFRYEATWDIEGPLLTWKATVSLPGRRWSLAGGTPEWTGGNEAKAVRDDVARSIDGLDA
Ga0210397_102004273	3300021403	Soil	VSVRMKRVVASSHVHAQTKTSFRYEATWHVEGPLLTWKATVSLPGRRWSLAGGTPEWTNGGEAKAVQDDIARSINGLEVTWARA
Ga0210389_112750081	3300021404	Soil	MKRVVASSHVHAETKTSFRYEATWCVEGPLLTWKATVSQRGKLWSLAGGTPEWTGGSEVKAVQQ
Ga0210387_112174662	3300021405	Soil	MKRVVASSHVHAETKTAFRYEATWHVEGPLLTWKATVSLPGRRWHLAGGTPEWTGGSEAKAVRDDVARSIDGLEA
Ga0210384_1000139624	3300021432	Soil	LKRLPAPAPAKRVVASSHVHSESRTSFRYEATWDIEGPLLTWKATVSLPGRRWSLAGGTPEWTGGNEAKAVRDDVARSIDGLDA
Ga0210392_104671492	3300021475	Soil	VSVRPQRVVASSHVHAETKTSFRYEATWHVEGPLLTWKATVTLPGRRWSLAGGTPEWTGGGEAKAVQDDI
Ga0210392_110638852	3300021475	Soil	VSVRMKRVVASSHVHAETKTSFRYEATWHIEGPLLTWKATVSLPGRRWSLAGGTPEWTGGGEVKAVQDDIARSIDGLEA
Ga0212090_102677991	3300022561	Glacier Valley	LTRVPAPAPRARLVASSHVHCETRTAYRYEATWDVEGPLLTWKATVSLPGRRWSLAGGTPEWTGGNEAKAVRDDVA
Ga0247782_10058453	3300022870	Plant Litter	LKRAPVAAPAPRAVASSHVHAETRTAFRYEATWDVEGPLLTWKATVSLPGRRWSLAGGTPEWTGGNEAKAVSDDVGRSIDGLQV
Ga0247779_10078272	3300022908	Plant Litter	VKRVVASSHVHAQTKTSFRYEATWHVEGPLLAWKAEVSLPGRRWSLAGGMPDWRGGSEAEAVREDVARSIDGLEA
Ga0209674_10023124	3300025226	Arabidopsis Root	LKRVVAGSHVHAETKTSFRYEAHWHVEGRLLTWKAQVSLPGRLWSLAGGTPEWTGGNEVKAVREDIARSIDGLQA
Ga0209672_1148422	3300025228	Arabidopsis Root	RGRLTRMKRVPAPAPAKRVVASSHVHSESRTSFRYEATWHIDGPLLTWKATVSLPGRRWCLAGGTPEWTGGNEAKAVRDDVARSIDGLET
Ga0209258_100025448	3300025242	Arabidopsis Root	MKRVPAPAPAKRVVASSHVHSESRTSFRYEATWHIDGPLLTWKATVSLPGRRWCLAGGTPEWTGGNEAKAVRDDVARSIDGLET
Ga0209258_1012032	3300025242	Arabidopsis Root	LKRVVAGSHVHAETKTSFRYEATWHVEGPLLAWKAEVSLPGRRWALAGGTPEWTGGNEAKAVREDIARSIDGLEA
Ga0209677_10026937	3300025253	Arabidopsis Root	LKRVVAGSHVHAETKTSFRYEATWHVEGPLLAWKAEVSLSGRRWALAGGTPEWTGGNEAKAVREDIARSIDGLEA
Ga0209148_10025416	3300025254	Arabidopsis Root	GGRRRRGRLTRMKRVPAPAPAKRVVASSHVHSESRTSFRYEATWHIDGPLLTWKATVSLPGRRWCLAGGTPEWTGGNEAKAVRDDVARSIDGLET
Ga0209759_10504091	3300025256	Arabidopsis Root	VKRVVASSHVHAQTKTSLRYEATWHVEGPLLTWKATVSLPGRRWSLAGGMPQWGGGSEAEAVREDIGRSIDGLELTP
Ga0209759_10550061	3300025256	Arabidopsis Root	PPLGWPTHPGEASSLKRVVASSHVHAQTKTSFRYEATWHVDGPLLTWQAEVSLPGRRWSLAGGTPEWAGGSELEAVREDIARSIDGLEA
Ga0207705_101082102	3300025909	Corn Rhizosphere	VKRVVASSHVHAQTKTAFAYEATWHVEGTLLTWKATVSLPGRSWNLAGGMPHGGGGGEAEAVREDVGRSIDGLICLPARSRGVHPR
Ga0207705_102504662	3300025909	Corn Rhizosphere	LKRVVAGSHVHAETKTSFRYEATWHVEGPLLAWQAEVSLPGRRWALAGGTPEWTGGNEAKAVRDDIARSIDGLQA
Ga0207705_103692672	3300025909	Corn Rhizosphere	LKRVVASSHVHAPTKTSLRYEATWRVEGPLLTWQATVSLPGRRWSLAGGMPQWGGGSEAEAVREDIGRSIDGLELTS
Ga0207695_100177619	3300025913	Corn Rhizosphere	LKRVVAGSHVHAETKTSFRYEATWHVEGPLLAWKAEVSLPGRRWALAGGTPEWSGGNEAKAVREDIARSIDGLEA
Ga0207695_101561262	3300025913	Corn Rhizosphere	LKRVVAGSHVHAETKTSFRYEATWHVEGPLLAWKAKVSLPGRKWALAGGTPEWTGGNEAKAVRDDIARSIDGLEA
Ga0207659_116868662	3300025926	Miscanthus Rhizosphere	LGWPTHQGEASDLKRVVAGSHVHAETKTSFRYEATWHVEGPLLAWKAEVSLPGRRWALAGGTPEWTGGNEVKAVRDDIARSIDGLQA
Ga0207690_106958522	3300025932	Corn Rhizosphere	LKRVVAGSHVHAETKTSFRYEATWHVEGPLLAWKAEVSLPGRRWALAGGTPEWTGGNEAKAVRDDIARSIDGLEA
Ga0207690_108045662	3300025932	Corn Rhizosphere	LKRVVAGSHVHAETKTSFRYEATWRVDGPLLAWKAKVSLPGRRWALAGGTPEWTGGNEVKAVREDIARSIDGLEA
Ga0207690_115932201	3300025932	Corn Rhizosphere	VKRVVASSHVHAQTKTAFAYEATWHVEGTLLTWKATVSLPGRSWNLAGGMPHGGGGGEAEAVREDVGRSIDGLICHPARSRGVHPR
Ga0207667_100170873	3300025949	Corn Rhizosphere	LKRVVAGSHVHAETKTSFRYEATWHVEGPLLAWKARVSLPGRRWALAGGTPEWTGGNEAKAVRDDIARSIDGLEA
Ga0207651_1000093713	3300025960	Switchgrass Rhizosphere	VKRVVASSHVHAQTKTSFRYEATWRVEGPLLTWKATVSLPGRRWSLAGGMPHWGGGSEAEAVREDVGRSIDGLEIV
Ga0207678_101006843	3300026067	Corn Rhizosphere	LKRVVAGSHVHAETKTSFRYEATWHVEGPLLAWKAEVSLPGRRWALVGGTPEWTGGNEAKAVRDDIARSIDGLQA
Ga0207674_114342612	3300026116	Corn Rhizosphere	LKRVVAGSHVHAETKTSFRYEATWHVEGPLLAWKAQVSLPGRRWALAGGTPEWTGGNEAKAVRDDIARSIDGLEA
Ga0207675_1000454761	3300026118	Switchgrass Rhizosphere	TKTSFRYEATWRVDGPLLAWKAKVSLPGRRWALAGGTPEWTGGNEVKAVREDIARSIDGLEA
Ga0207698_103671582	3300026142	Corn Rhizosphere	LKRVVAGSHVHAETKTSFRYEATWRVEGPLLAWKARVSLPGRRWALAGGTPEWTGGNEAKAVRDDIARSIDGLEA
Ga0209112_100273962	3300027817	Forest Soil	VKRAVASSHVHAQTKTSFRYEATWHVDGSLLTWKATVSLPGRRWSLAGGLPHWSGGSEAAAVREDIGRSIDGLELR
Ga0302151_102093882	3300028562	Bog	AQTKTSFRYEATWHVDGPLLTWKAAVSLPGKRWSLAGGTPEWKGGSEAEAVREDVGRSIDGLEA
Ga0265336_100000142	3300028666	Rhizosphere	MKRIVASSHMHAETKASFRYEATWNVEGALLTWNATVSLPGRRWSLAGGTPEWTCGSEAAAVREDVARSIDGLVIC
Ga0302264_10779092	3300028732	Fen	MKRVVASSHVHAQTRTSFRYEATWHIEGVMLTWKALVTLPGRRWNLAGGTPEWQAGSEAKAVRDDIARSIDGLEVP
Ga0302202_105180632	3300028762	Bog	MKRVVASSHVHAQTKTSFRYEATWHVDGPLLTWKAAVSLPGKRWSLAGGTPEWKGGSEAEAVREDVGRSIDGLEA
Ga0302198_100334933	3300028765	Bog	MKRVVASSHVHAQTKTLFRYEATWHVDGPLLTWKAAVSLPGRRWSLAGGTPEWKGGSEAEAVREDVGRSIDGLEA
Ga0307515_107876521	3300028794	Ectomycorrhiza	VSVRMKRVVASSHVHAQTKTSFRYEATWHVEGPMLTWRATVSLPGRRWSLAGGTPEWTGGGEAKAVQDDIARSIDGLEVS
Ga0302157_100900293	3300028813	Bog	MPPATMKRMKRLASSHVHAETKTSFRYEATWHVEGPLLTWKAAVSLPGRCWSLAGGTPEWTAGGEAKAVQDDIARSIDGLEA
Ga0302157_107327612	3300028813	Bog	PPPRRLATMKRVVASSHVHAQTKTSFHYEATWHVDGPLLTWKAAVSLPGRRWSLAGGTPEWKGGSEAEAVREDVGRSIDGLEA
Ga0302291_103098151	3300028865	Fen	DPERRPRRTRARNGAPTPDARMKRVVASSHVHAQTRTSFRYEATWHIEGVMLTWKALVTLPGRRWNLAGGTPEWQAGSEAKAVRDDIARSIDGLEVP
Ga0302154_106298431	3300028882	Bog	AVLSRPCAAVRMAVHSEEAPLNRVPAPAPAKRVVASSHVHSQSRTSYRYEATWDIEGSLLTWKATVSLPGRRWSLAGGTPEWTGGNEAKAVRDDVARSIDGLEA
Ga0247044_10299893	3300029896	Cryconite	LTRVPAPAPRARLVASSHVHCETRTAYRYEATWDVEGPLLTWKATVSLPGRRWSLAGGTPEWTGGNEAKAVRDDVARSIDGLEA
Ga0311329_103207652	3300029907	Bog	MKRVVASSHVHAQTKTSFHYEATWHVDGPLLTWKAAVSLPGRRWSLAGGTPEWKGGSEAEAVREDVGRSIDGLEA
Ga0311361_114836702	3300029911	Bog	TKTSFHYEATWHVDGPLLTWKAAVSLPGRRWSLAGGTPEWKGGSEAEAVREDVGRSIDGLEA
Ga0311371_1000413426	3300029951	Palsa	VKRVVASSHVHAETKTSFRYEATWHIEGPLLTWKAEVTLPGRRWSLAGGTPEWTGGSEAKAVRDDVGRSIDGLELA
Ga0311332_113418291	3300029984	Fen	HDPERRPRRTRARNGAPTPDARMKRVVASSHVHAQTRTSFRYEATWHIEGVMLTWKASVTLPGRRWNLAGGTPEWQAGSEAKAVRDDIARSIDGLEVP
Ga0311365_101179533	3300029989	Fen	VSLRTKRVVAGSHAHAHTKTSFRYEATWDVEGPLLTWKATVFLPGRRWSLAGGTPEWTGGGEAAAVRDDIARSIDGLEVA
Ga0311365_103443852	3300029989	Fen	MKRVVTSAHVHAETKTSFRYEATWHVEGVMLTWKASVTLPGRRWSLAGGTPDWTDGSEAKAVRDDIGRSIDGLEVS
Ga0302299_106453761	3300030010	Fen	PTPDARMKRVVASSHVHAQTRTSFRYEATWHIEGVMLTWKALVTLPGRRWNLAGGTPEWQAGSEAKAVRDDIARSIDGLEVP
Ga0311333_103854823	3300030114	Fen	VKRVHAPAPARRVVASSHVHAQTKAAFRYEATWHIEGVMLTWTASVTLPGRRWSLAGGTPEWTDGGEAQAVRDDIARSIDGLEVT
Ga0302196_100738253	3300030225	Bog	RVVASSHVHAQTKTSFHYEATWHVDGPLLTWKAAVSLPGRRWSLAGGTPEWKGGSEAEAVREDVGRSIDGLEA
Ga0311372_106411373	3300030520	Palsa	MKRAVTSSHVHAETKTAFRYEATWHVEGPLLTWKATVSLPGRRWHLAGGTPEWTGGSEAKAVRNDVARSIDGLEA
Ga0307511_101514653	3300030521	Ectomycorrhiza	LKRVVASSHVHAETKTAFRYEATWHVDGTLLTWKAEVSLPGRRWNLAGGTPEWTGGSEAEAVREDVARSIDGLQA
Ga0311357_112840751	3300030524	Palsa	ASSHVHAQTKTSFRYEATWHVDGPLLTWKAAVSLPGRRWSLAGGTPEWKGGSEAEAVREDVGRSIDGLEA
Ga0302317_102164471	3300030677	Palsa	SHVHAQTKTSFRYEATWHVDGPLLTWKAAVSLPGRRWSLAGGTPEWKGGSEAEAVREDVGRSIDGLEA
Ga0311366_117721392	3300030943	Fen	KRVVASSHVHAQTRTSFRYEATWHIEGVMLTWKALVTLPGRRWNLAGGTPEWQAGSEAKAVRDDIARSIDGLEVP
Ga0302323_1010312842	3300031232	Fen	MKRVVTSAHVHAETKTSFRYEATWHIEGVMLTWKASVTLPGRRWSLAGGTPDWTDGSEAKAVRDDIGRSIDGLEVS
Ga0302323_1013315221	3300031232	Fen	VKRVHAPAPARRVVASSHVHAQTKAAFRYEATWHIEGVMLTWTASVTLPGRRWSLAGGTPEWTDGGEAQAVRDDIARSIDGLEVA
Ga0307509_109241792	3300031507	Ectomycorrhiza	LKRVVASSHVHAETKTAFRYEATWRVDGTLLTWKAEVSLPGRRWNLAGGTPEWTGGSEAEAVREDVARSIDGLEA
Ga0311364_102800602	3300031521	Fen	MKRVVASSHVHAQTRTSFRYEATWHIEGVMLTWKASVTLPGRRWNLAGGTPEWQAGSEAKAVRDDIARSIDGLEVP
Ga0307508_108702251	3300031616	Ectomycorrhiza	LKRVVAGSHVHAETKTSFRYEATWHVEGPLLAWKAKVSLPGRRWALAGGTPEWTGGNEVKAVREDIARSIDGLEA
Ga0310813_100184096	3300031716	Soil	LKRVVAGSHVHAETKTSFRYEATWHVEGPLLAWKAEVSLPGRRWALAGGTPEWTGGNEVKAVRDDIARSIDGLQA
Ga0302321_1030538032	3300031726	Fen	MKRVVTSAHVHAETKTSFRYEATWHIEGVMLTWKASVTLPGRRWSLAGGTPDWTDGGEAKAVRDDVGRSIDGLEVS
Ga0307516_1000295213	3300031730	Ectomycorrhiza	MKRVVASSHVHAETKTSFRYEATWHVEGPLLTWKATVTLPGRRWSLAGGTPEWTGGGEAKAVQDDIARSIDGLEA
Ga0306925_110125022	3300031890	Soil	LKRVVAGSHVHAETKTSFRYEATWHVEGSLLTWKATVSLPGRRWSLAGGLPHWSGGSEAAAV
Ga0308175_1007059382	3300031938	Soil	VKRVVASSHVHAQTKASFRYEATWHVEGPLLTWKATVSRPGRCWSLAGGLPQWCGGSEAEAVREDIGRSIDGLET
Ga0308175_1029384492	3300031938	Soil	LKRVVAGSHVHAETKTSFRYEATWHVEGPLLAWKAEVSLPGRRWALAGGTPEWSGGNEAKAVRDDIARSIDGLEA
Ga0308176_123905231	3300031996	Soil	LKRVVAGSHVHAETKTSFRYEATWHVEGPLLAWRARVSLPGRRWALAGGTPEWSGGNEAKAVRDDIARSIDGLEA
Ga0308173_109338712	3300032074	Soil	LKRVVAGSHVHAETKTSFRYEATWHVEGPLLAWRARVSLPGRRWALAGGTPEWTGGDEAKAVRDDIARSIDGLEA
Ga0308173_116435601	3300032074	Soil	LKRVVASSHVHAESRTAFRYEAVWHVEGPLLTWQATVTLPGRQWTLAGGTPEWTGGSEAQAVRDDVARSIDGLEA
Ga0335083_104634102	3300032954	Soil	VKRAVASAHVHAQTRTSLRYEATWHVEGSLLTWKATVSLPGRRWNLAGGLPHWHGGSEAAAVREDIARSIDGLELG
Ga0373959_0073104_280_507	3300034820	Rhizosphere Soil	LKRVVAGSHVHAETKTSFRYEATWHVEGPLLTWKAEVSLPGRRWALAGGTPEWTGGNEAKAVRDDIARSIDGLEA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F062395

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences