Basic Information | |
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Taxon OID | 3300002596 Open in IMG/M |
Scaffold ID | draft_1419371 Open in IMG/M |
Source Dataset Name | Hydrocarbon contaminated oil fields microbial communities from Alberta, Canada - Microbes in water sample from Medicine Hat oil field -PW_MHGC_2012April10 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | McGill University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8981 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (85.71%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Medicine Hat, Alberta Canada | |||||||
Coordinates | Lat. (o) | 50.033333 | Long. (o) | -110.666667 | Alt. (m) | Depth (m) | 800 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F033857 | Metagenome / Metatranscriptome | 176 | Y |
F045124 | Metagenome / Metatranscriptome | 153 | Y |
F071368 | Metagenome / Metatranscriptome | 122 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
draft_141937111 | F071368 | N/A | MDSLPHPVTATDAYLARIVQQNDEIIALMKTLGERPKTRRLKEPKP* |
draft_14193714 | F033857 | GAGG | MVEIIDLTTLSPKTVIVRIGNGDEIEEIDLTIVPARGTLLLAQATQKHGGWDKIPDDEMIPAIAAICQQSNPKITAEWLETKLTRPQLAGLTQVVIAQAFRRWGNGQDDGKEGDEKNR* |
draft_14193718 | F045124 | AGGTGG | VTDDGLRQMVYETRQDVRWIKDTLREIKEANQAQDERINEIKARQDSQTGRDGALAAIVSMVVAFFTALASGGWLR* |
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