Scaffold JGI25385J37094_10000002

Overview

Basic Information

• Taxon OID: 3300002558
• Scaffold ID: JGI25385J37094_10000002
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41513
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (64.71%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003037	Metagenome / Metatranscriptome	511	Y
F005263	Metagenome / Metatranscriptome	406	Y
F005627	Metagenome / Metatranscriptome	394	Y
F005700	Metagenome / Metatranscriptome	392	N
F007915	Metagenome / Metatranscriptome	342	Y
F022852	Metagenome / Metatranscriptome	212	N
F023823	Metagenome	208	N
F030030	Metagenome / Metatranscriptome	186	Y
F042845	Metagenome / Metatranscriptome	157	Y
F046962	Metagenome / Metatranscriptome	150	Y
F061700	Metagenome / Metatranscriptome	131	Y
F073400	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25385J37094_1000000215	F003037	GGAG	MCGKDLDDDKAMANFLVCGDSSHGLLRFFTGDGCYFTTDERVAEELMKKGKRVHVVDPKEFFGNQTINLE*
JGI25385J37094_1000000217	F007915	GAG	MSLAEAAKPALPSSTLRSYAMIGIVLYAFGLVLNEIGNGLAQLWLVPYADTISALGFVIALYTASLAGLGTRLTVLIGLIYGIGIFYVSEPDQTYAVSGLKIGSYTHYVGLGLIGFTMILLIALAFYLTRAKSAHRALPKQDPGSTS*
JGI25385J37094_1000000218	F005700	GGA	LTYRTEYTLGFLALLPLLATGVAKGTGWLVTVVVVYVGVPLLIWSLLVDRLALLVLRIICQLRESSGHQYYFERQVGKPGVSRRILRDIRVLVFVFFLSALIVPQVTEVTPQNLVIVSNAFIYVAIFLLAIPSSIHVLLWVLEDSGLRCHNTTRLTVTVPAAWTSRWLSSLGGIGAFVSFAVAMGGSLDRAIALGFTLMISLLPSCILAPTLFYRRLEPGIIAKIRQSKAAMTMARLFPQVSGPSLPASSAPTLRSVRVNEDTKQTAQPHS*
JGI25385J37094_1000000222	F005263	N/A	LERRARRIFTIDHDVSEKIDELAXGHTLEVNVLVNKAIRRYVEWGRYVDTFKLVTSDPRLMKILWSHITIEEAREKGTQNGKDTVVEFILYYFHKFDLDSVLKIFQLIGAEYANAYVYSEFGDKDSRTIILRHSMGRSASAYYGASFKALCDRLGVKVELEESEDQLICKIGPASTLRTIVPKSFKEQLAKQSIERTVGS*
JGI25385J37094_1000000227	F046962	GGA	MEEIANSGYPPETTSRTVLQDTMTGDQLKNLLAELISSSASLNVRVWLDGVYTDIENAGSHREWMKGREVYFKVEGKVDGQNCLDEAAPRSI*
JGI25385J37094_1000000228	F042845	AGGAG	MXTRKWKAFLRMNGETTVDTSQDILTEFKAMVEYLKWIGIDYSMVVQVEGGQTEQSRTLALEQTPRRRGRGQVGD*
JGI25385J37094_1000000229	F030030	AGGAG	MAKFIMSIGDTAFEILANEAKNRDVTVQQLLRAVVVPDWIRQNADGQLPRENHSNLIQSSIYGGDSRNSRMLVSPVARLRQ*
JGI25385J37094_1000000233	F061700	N/A	MCDKCHRFFVISYEKNEKGEVVEIGHELDIRIKASGVVRVDESEPQRGFERNPPARKYEEQTCW*
JGI25385J37094_1000000241	F023823	GGGGG	LEPAEALVLLSLRYVSGSKCWCLIELGDETKSAFDNALVDSVSAALDALGPTVKESIFLLLQRRNSISPDGIPKLVGEFAKALQDVLGPTARVVEKLIIAGLIARKQVPANIAQGRSLLEVVGSIRLSQISQS*
JGI25385J37094_1000000242	F073400	GAGG	MRRDQLRRFLNSEVVGQLSNGLFFEGYVVDQAGRALVFDRDGRAPHQISATRVKWLAKAVRYC*
JGI25385J37094_1000000243	F022852	N/A	MRGLTVTIPYSVRISRELLEEMRRLYDRMEPPKPTFSAVLSHIVKLGWDSYKAQKQGDVGLQKVTVAAYPKKIHDQAFQR*
JGI25385J37094_1000000248	F005627	N/A	MQSPIRRYLPHLLVGLTISLIMVGAYLAVGFASLTAPKALWSVNPVTIAFSGSAGIGSSGSVGEVVKCAPKVENVVFHTAVSNPTKLSLSVSPGGEATCGPAPDPVTVTASCLVAAPNCKGTYTGTVTILEGYTTIPPSLSVTIVVT*