Scaffold TOLCLC_10022674

Overview

Basic Information

• Taxon OID: 3300002498
• Scaffold ID: TOLCLC_10022674
• Source Dataset Name: Hydrocarbon resource environments microbial communities from Canada and USA - Toluene degrading community from Alberta, Canada
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: McGill University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3266
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location

• Location Name: Northern Alberta, Canada
• Coordinates
  • Lat. (^o): 54.0
  • Long. (^o): -114.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F069434	Metagenome / Metatranscriptome	124	Y
F070634	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
TOLCLC_100226743	F070634	AGG	MPSTILRESTVRKGRHIISVLEFESGDIVMYVDDNRTGIKEDIQLREYINAYEVYYDLDQGWMANGQEIPYKDSF*
TOLCLC_100226744	F069434	AGGAGG	MNRVFDKNTCWNIFDHTDSPEPLWDLQRQGKHTEARCIALRLTLRHPLRMLPVIINCLLCRRS*