Scaffold plot21A_1016703

Overview

Basic Information

• Taxon OID: 3300002023
• Scaffold ID: plot21A_1016703
• Source Dataset Name: Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA - plot21A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 503
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_13_52_11b (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Grasslands → Switchgrass Rhizosphere And Bulk Soil → Switchgrass Rhizosphere And Bulk Soil Microbial Communities From Knoxville, Tennessee, Usa

Source Dataset Sampling Location

• Location Name: Knoxville, Tennessee, USA
• Coordinates
  • Lat. (^o): 35.9728
  • Long. (^o): -83.9422

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046519	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
plot21A_10167032	F046519	N/A	EEQRVTSGELTGSPGGTGVSRPISGGEVASDALSVVGPLRGT*