Scaffold GOS2236_1056619

Overview

Basic Information

• Taxon OID: 3300001968
• Scaffold ID: GOS2236_1056619
• Source Dataset Name: Marine microbial communities from Lake Gatun, Panama - GS020
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4481
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Lake Gatun, Panama
• Coordinates
  • Lat. (^o): 9.164444
  • Long. (^o): -79.83611
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034907	Metagenome / Metatranscriptome	173	Y
F058099	Metagenome / Metatranscriptome	135	Y
F095381	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2236_10566193	F095381	N/A	MTTIQVLINGNQVEGQIDEIAKILGMVSNTMQQPVSSTIEEDLLPFNKFAIRELTLHLGEELATQVVNKLERCAKSYFPDFRNFIGMYQKVAGNVEHRQLLKTISAVYRYKFGRYANDAAKYSLKSEIKYATICPHCGAIANAFVVRLTKEGLW*
GOS2236_10566195	F058099	N/A	MTKQLLISQLRLGKNGNDILHILDALCDGMDSGESRQDNVPTLDEIQF*
GOS2236_10566199	F034907	AGGA	MITAIVGGVILTTFGIMFYLDDRMGGGLYDPDPTAFDRYRKNRK*