Scaffold JGI20235J16296_1003697

Overview

Basic Information

• Taxon OID: 3300001632
• Scaffold ID: JGI20235J16296_1003697
• Source Dataset Name: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF001
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 711
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location

• Location Name: Harvard Forest LTER, Petersham, MA, USA
• Coordinates
  • Lat. (^o): 42.532967
  • Long. (^o): -72.209488
  • Depth (m): 0 to .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006628	Metagenome / Metatranscriptome	368	Y
F038345	Metagenome / Metatranscriptome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20235J16296_10036972	F006628	GGAGG	MISRLIKAALLAALLAVVVQSLPDIKRYLELREM*
JGI20235J16296_10036973	F038345	AGCAGG	METIVGFVAGYLVGTREGRDGLERLRSSWHSIRTSPEVRKLAGDAITLAESVVRQRSGSASIGGAVGN