NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI11834J15748_1005437

Scaffold JGI11834J15748_1005437


Overview

Basic Information
Taxon OID3300001579 Open in IMG/M
Scaffold IDJGI11834J15748_1005437 Open in IMG/M
Source Dataset NameMarine microbial communities from the Deep Atlantic Ocean - MP0740
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)981
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. IMCC9063(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean
CoordinatesLat. (o)-31.81Long. (o)6.84Alt. (m)Depth (m)4001.3
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063069Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
JGI11834J15748_10054371F063069AGTAGMPNSPWEIFNSSLILELNSPIKKLCPTHEKKVKTKPKIIILKLDLTISIIMFNYEL*

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