Scaffold JGI24003J15210_10005072

Overview

Basic Information

• Taxon OID: 3300001460
• Scaffold ID: JGI24003J15210_10005072
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5613
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012114	Metagenome	283	Y
F018906	Metagenome	232	Y
F019646	Metagenome	228	Y
F032992	Metagenome	178	Y
F093724	Metagenome	106	Y
F093848	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24003J15210_1000507214	F093724	N/A	MKYYFDEFATEDIQMWVRECGRDIPQAKLRGDLDDVRTLENVVRSGAKELLQRLRDENE*
JGI24003J15210_1000507215	F093848	GAG	MNEYVEDSLYDILDRLSTKLVQLYYVNSWELDDQDGMRVAGNILYARNFYNADV*
JGI24003J15210_1000507217	F032992	GGAG	MNKAMDQNFRYYDCKNIVDEITGIEQENLEIMVAVPKIDLSTAENRQENIVAISGIVEEQYRRGVESFTYEEYTGE*
JGI24003J15210_100050722	F019646	N/A	MSNNNQNFEIHYTSDCCGSYVHSDAEICPACLEHCEVIEDRIDYESSEAVHAAQGLDYFCS*
JGI24003J15210_100050727	F012114	GAGG	MSSNNCIVPEVRPNVWVVIDAQTGDKIGEVGAITESEARQLVSHHVLIPFRLSHIEE*
JGI24003J15210_100050728	F018906	AGGAG	MKTKVNPLKLNGTRFNSQAHKEQGRYVKHYYFSNGLGASVALHDGTYGGQHGYFELAILKYQHGTDPYTTNEIIYDTTINHDLGCVDVIGWLDFHEVASKLQEIRNYNTGDYNYNVK*