Scaffold Microbial15j_121021

Overview

Basic Information

• Taxon OID: 3300001321
• Scaffold ID: Microbial15j_121021
• Source Dataset Name: Bioengineered switchgrass rhizosphere microbial community from Knoxville, Tennessee, USA - 15 Joint
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 537
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Bioengineered Switchgrass Rhizosphere Microbial Community From Knoxville, Tennessee, Usa

Source Dataset Sampling Location

• Location Name: Knoxville, Tennessee, USA
• Coordinates
  • Lat. (^o): 35.98
  • Long. (^o): -83.92

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030963	Metagenome / Metatranscriptome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Microbial15j_1210211	F030963	N/A	LGEAGTGFLIIRLVITFLFLVKTRGATLAGVCLHLEAD*