Scaffold Lynggard_1005767

Overview

Basic Information

• Taxon OID: 3300000482
• Scaffold ID: Lynggard_1005767
• Source Dataset Name: Anaerobic digester microbial communities from Northern Denmark, sample from Lynggard manure
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Aalborg University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5813
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Digester → Anaerobic Digester Microbial Communities From Soeholt, Denmark

Source Dataset Sampling Location

• Location Name: Soeholt, Denmark
• Coordinates
  • Lat. (^o): 56.446744
  • Long. (^o): 9.372697

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034940	Metagenome / Metatranscriptome	173	Y
F043951	Metagenome / Metatranscriptome	155	N
F101100	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Lynggard_100576710	F043951	AGGAG	MEHLSLGRPIEASLGPRYQCPMCGLKLWTIQAPWTGWQEWYRTEDGRRHYKHRCNIMEDALVMFRWMFGQDW*
Lynggard_100576711	F101100	AGGAG	MKPVFRVESANEEVVRGGWYLLADSLAAAREVYPAHLFPSMTFIEVGKGLCVECNRRAVDALVEER*
Lynggard_100576712	F034940	GAGG	MGNDCWYYRAQYAGMTKVCMRKSIVECGRIRRFGLCPKPPDSEEWRRCGFAIGQHEIPLMVEE*