Scaffold PR_CR_10_Liq_1_inCRDRAFT_1001570

Overview

Basic Information

• Taxon OID: 3300000385
• Scaffold ID: PR_CR_10_Liq_1_inCRDRAFT_1001570
• Source Dataset Name: Marine microbial community from Cabo Rojo, Puerto Rico - PR CR 10% Liquid 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 12632
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (89.19%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Enviromental → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Sampling Location

• Location Name: Cabo Rojo, Puerto Rico
• Coordinates
  • Lat. (^o): 17.951083
  • Long. (^o): -67.193167
  • Depth (m): .05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039532	Metagenome / Metatranscriptome	163	Y
F040583	Metagenome / Metatranscriptome	161	Y
F054790	Metagenome / Metatranscriptome	139	Y
F074540	Metagenome	119	N
F096774	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
PR_CR_10_Liq_1_inCRDRAFT_100157011	F039532	AGGAG	MSEPYWKYLPEGTFTEEELWEAIAEARGVDVSEIADGDLVEYL*
PR_CR_10_Liq_1_inCRDRAFT_100157012	F096774	GGAGG	MRTIKELSDYEFIAMNNIKRAALALTDGDYNKVEECMGEVLMCMYEVNK*
PR_CR_10_Liq_1_inCRDRAFT_100157015	F074540	AGGA	MLTMTTDRDTVTIHGLPMGEYIEWVKKTHYAYCYNGGERIVDMFSFAWEKNNPNMADFLGAAVNFIDYYFEEKEYAN*
PR_CR_10_Liq_1_inCRDRAFT_10015705	F040583	AGGAG	MFVYLVTTLDGFVARVTTDGDPTDHPAFWGRVANVETLGEADLHAV*
PR_CR_10_Liq_1_inCRDRAFT_10015708	F054790	AGG	MTLNEAWASVYAALPDNAFDYVGKPFYNDDDGSIQLWDGSKMVTYYSAPF*