NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F096774

Metagenome Family F096774

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F096774
Family Type Metagenome
Number of Sequences 104
Average Sequence Length 47 residues
Representative Sequence MRSNKELNDYEFIAMNNIKRAALAIYDGDYNKVEACLGEALECMYKVNT
Number of Associated Samples 71
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 74.04 %
% of genes near scaffold ends (potentially truncated) 39.42 %
% of genes from short scaffolds (< 2000 bps) 83.65 %
Associated GOLD sequencing projects 62
AlphaFold2 3D model prediction Yes
3D model pTM-score0.72

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (60.577 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(25.000 % of family members)
Environment Ontology (ENVO) Unclassified
(44.231 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(51.923 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 53.25%    β-sheet: 0.00%    Coil/Unstructured: 46.75%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.72
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Structural matches with SCOPe domains

SCOP familySCOP domainRepresentative PDBTM-score
a.118.8.0: automated matchesd6kp3a_6kp30.91083
f.5.1.0: automated matchesd5azpa_5azp0.89789
a.25.1.1: Ferritind1jiga_1jig0.88031
a.25.1.1: Ferritind2cf7a_2cf70.8797
a.246.1.1: Hyaluronidase post-catalytic domain-liked2v5ca32v5c0.8759


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 104 Family Scaffolds
PF09723Zn-ribbon_8 1.92
PF06067DUF932 1.92
PF02511Thy1 0.96
PF13539Peptidase_M15_4 0.96
PF136402OG-FeII_Oxy_3 0.96
PF02945Endonuclease_7 0.96

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 104 Family Scaffolds
COG1351Thymidylate synthase ThyX, FAD-dependent familyNucleotide transport and metabolism [F] 0.96


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A60.58 %
All OrganismsrootAll Organisms39.42 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000116|DelMOSpr2010_c10259431Not Available525Open in IMG/M
3300000385|PR_CR_10_Liq_1_inCRDRAFT_1001570Not Available12632Open in IMG/M
3300001336|ML7_10122780All Organisms → Viruses → Predicted Viral1314Open in IMG/M
3300001336|ML7_10145934All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1471Open in IMG/M
3300001336|ML7_10147746All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage993Open in IMG/M
3300001336|ML7_10222069All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage576Open in IMG/M
3300001336|ML7_10223729Not Available573Open in IMG/M
3300001970|GOS2248_10041741All Organisms → Viruses → Predicted Viral2579Open in IMG/M
3300002408|B570J29032_109953977Not Available6390Open in IMG/M
3300004279|Ga0066605_10121721All Organisms → Viruses → Predicted Viral1061Open in IMG/M
3300004279|Ga0066605_10224537Not Available712Open in IMG/M
3300004279|Ga0066605_10276345Not Available623Open in IMG/M
3300005581|Ga0049081_10277404Not Available582Open in IMG/M
3300005613|Ga0074649_1094432All Organisms → Viruses → Predicted Viral1100Open in IMG/M
3300006025|Ga0075474_10041666All Organisms → Viruses → Predicted Viral1577Open in IMG/M
3300006025|Ga0075474_10164050Not Available693Open in IMG/M
3300006026|Ga0075478_10159721Not Available700Open in IMG/M
3300006867|Ga0075476_10197788Not Available733Open in IMG/M
3300006868|Ga0075481_10212793Not Available688Open in IMG/M
3300006916|Ga0070750_10391968Not Available581Open in IMG/M
3300007538|Ga0099851_1091992All Organisms → Viruses → Predicted Viral1161Open in IMG/M
3300007538|Ga0099851_1304162Not Available562Open in IMG/M
3300007539|Ga0099849_1014154All Organisms → Viruses → Predicted Viral3523Open in IMG/M
3300007539|Ga0099849_1324258Not Available552Open in IMG/M
3300007541|Ga0099848_1131008Not Available940Open in IMG/M
3300007541|Ga0099848_1276483Not Available581Open in IMG/M
3300007725|Ga0102951_1127295Not Available719Open in IMG/M
3300007960|Ga0099850_1049449All Organisms → Viruses → Predicted Viral1796Open in IMG/M
3300007960|Ga0099850_1066452Not Available1517Open in IMG/M
3300009000|Ga0102960_1001822All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon8153Open in IMG/M
3300009124|Ga0118687_10008299All Organisms → Viruses → Predicted Viral3467Open in IMG/M
3300009169|Ga0105097_10730355Not Available562Open in IMG/M
3300010296|Ga0129348_1178634Not Available727Open in IMG/M
3300010297|Ga0129345_1308129Not Available548Open in IMG/M
3300010300|Ga0129351_1384538Not Available524Open in IMG/M
3300010318|Ga0136656_1111229Not Available956Open in IMG/M
3300010389|Ga0136549_10357059Not Available598Open in IMG/M
3300010389|Ga0136549_10378460Not Available577Open in IMG/M
3300017949|Ga0181584_10141741All Organisms → Viruses → Predicted Viral1616Open in IMG/M
3300017950|Ga0181607_10514051Not Available638Open in IMG/M
3300017962|Ga0181581_10256374All Organisms → Viruses → Predicted Viral1137Open in IMG/M
3300017987|Ga0180431_10225874All Organisms → Viruses → Predicted Viral1410Open in IMG/M
3300017987|Ga0180431_10333835All Organisms → Viruses → Predicted Viral1096Open in IMG/M
3300017987|Ga0180431_10672807Not Available703Open in IMG/M
3300017989|Ga0180432_10172386Not Available1758Open in IMG/M
3300017989|Ga0180432_10349296All Organisms → Viruses → Predicted Viral1113Open in IMG/M
3300017991|Ga0180434_10326497All Organisms → Viruses → Predicted Viral1200Open in IMG/M
3300017991|Ga0180434_10880214Not Available674Open in IMG/M
3300017991|Ga0180434_10943226Not Available649Open in IMG/M
3300017991|Ga0180434_11427633Not Available517Open in IMG/M
3300018065|Ga0180430_10843187Not Available637Open in IMG/M
3300018080|Ga0180433_10688620Not Available760Open in IMG/M
3300018080|Ga0180433_10708789Not Available748Open in IMG/M
3300018080|Ga0180433_11372749Not Available508Open in IMG/M
3300018423|Ga0181593_10500410Not Available889Open in IMG/M
3300018424|Ga0181591_10332144All Organisms → Viruses → Predicted Viral1150Open in IMG/M
3300018424|Ga0181591_10682049Not Available725Open in IMG/M
3300018426|Ga0181566_10076960All Organisms → Viruses → Predicted Viral2556Open in IMG/M
3300019708|Ga0194016_1003501All Organisms → Viruses → Predicted Viral1515Open in IMG/M
3300019756|Ga0194023_1013881All Organisms → Viruses → Predicted Viral1626Open in IMG/M
3300020048|Ga0207193_1122859All Organisms → Viruses → Predicted Viral2272Open in IMG/M
3300020055|Ga0181575_10009006All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon6778Open in IMG/M
3300020505|Ga0208088_1016952Not Available970Open in IMG/M
3300021378|Ga0213861_10249581Not Available937Open in IMG/M
3300021958|Ga0222718_10478454Not Available607Open in IMG/M
3300021964|Ga0222719_10053459All Organisms → Viruses → Predicted Viral3068Open in IMG/M
3300021964|Ga0222719_10276704Not Available1101Open in IMG/M
3300022063|Ga0212029_1024490Not Available826Open in IMG/M
3300022187|Ga0196899_1183939Not Available562Open in IMG/M
3300022198|Ga0196905_1027562All Organisms → Viruses → Predicted Viral1728Open in IMG/M
3300022200|Ga0196901_1079249Not Available1174Open in IMG/M
3300022200|Ga0196901_1189409Not Available666Open in IMG/M
3300022935|Ga0255780_10135643All Organisms → Viruses → Predicted Viral1370Open in IMG/M
3300023081|Ga0255764_10113971All Organisms → Viruses → Predicted Viral1469Open in IMG/M
(restricted) 3300023109|Ga0233432_10009763Not Available7804Open in IMG/M
(restricted) 3300023109|Ga0233432_10078531All Organisms → Viruses → Predicted Viral1937Open in IMG/M
(restricted) 3300023109|Ga0233432_10125457Not Available1392Open in IMG/M
(restricted) 3300023109|Ga0233432_10235078All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon887Open in IMG/M
(restricted) 3300023109|Ga0233432_10363799Not Available645Open in IMG/M
(restricted) 3300023109|Ga0233432_10429189Not Available570Open in IMG/M
3300023115|Ga0255760_10056069All Organisms → Viruses → Predicted Viral2577Open in IMG/M
3300023180|Ga0255768_10120578All Organisms → Viruses → Predicted Viral1714Open in IMG/M
(restricted) 3300024062|Ga0255039_10068237All Organisms → Viruses → Predicted Viral1375Open in IMG/M
(restricted) 3300024255|Ga0233438_10087580Not Available1454Open in IMG/M
3300025646|Ga0208161_1132825Not Available643Open in IMG/M
3300025646|Ga0208161_1153232Not Available572Open in IMG/M
3300025653|Ga0208428_1000300Not Available24743Open in IMG/M
3300025653|Ga0208428_1000878All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage13137Open in IMG/M
3300025674|Ga0208162_1060830All Organisms → Viruses → Predicted Viral1228Open in IMG/M
3300025701|Ga0209771_1040672All Organisms → Viruses → Predicted Viral1775Open in IMG/M
3300025705|Ga0209374_1121136Not Available769Open in IMG/M
3300025705|Ga0209374_1164952Not Available614Open in IMG/M
3300025771|Ga0208427_1019309All Organisms → Viruses → Predicted Viral2660Open in IMG/M
3300027721|Ga0209492_1144047All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage833Open in IMG/M
(restricted) 3300027730|Ga0247833_1288605Not Available560Open in IMG/M
3300027917|Ga0209536_101814586Not Available735Open in IMG/M
3300033995|Ga0335003_0012566Not Available4466Open in IMG/M
3300034073|Ga0310130_0041868All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1384Open in IMG/M
3300034073|Ga0310130_0074631Not Available1010Open in IMG/M
3300034095|Ga0335022_0006150Not Available7452Open in IMG/M
3300034106|Ga0335036_0496004Not Available762Open in IMG/M
3300034356|Ga0335048_0084713All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium1940Open in IMG/M
3300034356|Ga0335048_0127696Not Available1487Open in IMG/M
3300034374|Ga0348335_107083Not Available862Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous25.00%
Hypersaline Lake SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment12.50%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh11.54%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater6.73%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater5.77%
Benthic LakeEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Benthic Lake4.81%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine4.81%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient3.85%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water2.88%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment1.92%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater1.92%
Marine Methane Seep SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment1.92%
Fracking WaterEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water1.92%
SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment0.96%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic0.96%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment0.96%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater0.96%
Marine SedimentEnvironmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment0.96%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater0.96%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine0.96%
EnviromentalEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Enviromental0.96%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine0.96%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater0.96%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water0.96%
WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water0.96%
Saline Water And SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment0.96%
HypersalineEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline0.96%
SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment0.96%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300000385Marine microbial community from Cabo Rojo, Puerto Rico - PR CR 10% Liquid 1EnvironmentalOpen in IMG/M
3300001336ML7EnvironmentalOpen in IMG/M
3300001970Hypersaline microbial communities from Punta Cormorant, Floreana Island, Equador - GS033EnvironmentalOpen in IMG/M
3300002408Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)EnvironmentalOpen in IMG/M
3300004279Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10mEnvironmentalOpen in IMG/M
3300005581Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRFEnvironmentalOpen in IMG/M
3300005613Saline sediment microbial communities from Etoliko Lagoon, Greece - sedimentEnvironmentalOpen in IMG/M
3300006025Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006026Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006867Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300006868Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNAEnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300007538Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007539Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaGEnvironmentalOpen in IMG/M
3300007541Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaGEnvironmentalOpen in IMG/M
3300007725Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_B_H2O_MGEnvironmentalOpen in IMG/M
3300007960Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaGEnvironmentalOpen in IMG/M
3300009000Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MGEnvironmentalOpen in IMG/M
3300009124Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsfEnvironmentalOpen in IMG/M
3300009169Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015EnvironmentalOpen in IMG/M
3300010296Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_DNAEnvironmentalOpen in IMG/M
3300010297Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_DNAEnvironmentalOpen in IMG/M
3300010300Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNAEnvironmentalOpen in IMG/M
3300010318Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.8_DNAEnvironmentalOpen in IMG/M
3300010389Marine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsfEnvironmentalOpen in IMG/M
3300017949Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017950Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017962Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071404AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017987Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_1 metaGEnvironmentalOpen in IMG/M
3300017989Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_2 metaGEnvironmentalOpen in IMG/M
3300017991Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_2 metaGEnvironmentalOpen in IMG/M
3300018065Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_S_2 metaGEnvironmentalOpen in IMG/M
3300018080Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_1 metaGEnvironmentalOpen in IMG/M
3300018423Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071413AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018424Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018426Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101402AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300019708Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRC_2-3_MGEnvironmentalOpen in IMG/M
3300019756Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW6Sep16_MGEnvironmentalOpen in IMG/M
3300020048Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915EnvironmentalOpen in IMG/M
3300020055Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101411CT metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020505Freshwater microbial communities from Lake Mendota, WI - 02APR2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300021378Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO131EnvironmentalOpen in IMG/M
3300021958Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27DEnvironmentalOpen in IMG/M
3300021964Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34DEnvironmentalOpen in IMG/M
3300022063Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v2)EnvironmentalOpen in IMG/M
3300022187Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)EnvironmentalOpen in IMG/M
3300022198Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022200Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022935Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405AT metaGEnvironmentalOpen in IMG/M
3300023081Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaGEnvironmentalOpen in IMG/M
3300023109 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MGEnvironmentalOpen in IMG/M
3300023115Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071410BT metaGEnvironmentalOpen in IMG/M
3300023180Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaGEnvironmentalOpen in IMG/M
3300024062 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_1EnvironmentalOpen in IMG/M
3300024255 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MGEnvironmentalOpen in IMG/M
3300025646Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025653Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025674Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025701Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025705Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10m (SPAdes)EnvironmentalOpen in IMG/M
3300025771Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027721Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015 (SPAdes)EnvironmentalOpen in IMG/M
3300027730 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_8mEnvironmentalOpen in IMG/M
3300027917Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)EnvironmentalOpen in IMG/M
3300033995Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056EnvironmentalOpen in IMG/M
3300034073Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XLEnvironmentalOpen in IMG/M
3300034095Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Feb2014D0-rr0091EnvironmentalOpen in IMG/M
3300034106Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131EnvironmentalOpen in IMG/M
3300034356Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jun2014-rr0152EnvironmentalOpen in IMG/M
3300034374Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSpr2010_1025943113300000116MarineMRSNKELNDYEFIAMNNLKRAALAIYDGDYNRVESCLSEALQCMYKVNT*
PR_CR_10_Liq_1_inCRDRAFT_1001570123300000385EnviromentalMRTIKELSDYEFIAMNNIKRAALALTDGDYNKVEECMGEVLMCMYEVNK*
ML7_1012278053300001336Benthic LakeMRSNLELNDYEFIAMNNLKRAALALSEGDYNHVEACVGEVLACMYKVNT*
ML7_1014593463300001336Benthic LakeMNNLKRAALALSEGDYNHVEACVGEVLACMYKVNR*
ML7_1014774643300001336Benthic LakeMAMRTNLELNDYEFIAMNNLKRAALALSEGDYNHVEACVGEVLACMYKLNSPKTVTI*
ML7_1022206923300001336Benthic LakeVNLSRTNKELNDYEFIAMNNIKRAALAIFDGDYNKVEACLSEALSSIYKVNKP*
ML7_1022372913300001336Benthic LakeEFIAMNNLKRAALALSEGDYNHVEACVGEVLECMYKVNR*
GOS2248_1004174193300001970HypersalineMRTNKELSDYEFIAMNNIKRAALALSDGDYNKVEASLGEALQCLYEVNK*
B570J29032_10995397733300002408FreshwaterMRSNKELNDYEFIASNNIKRAMLNLFEGNHNEVEKYLGEALECMYKINK*
Ga0066605_1012172123300004279MarineMKTNKELSDYEFIAMNNIKRAALAIFDGDYNKVETCLGEALECMYKVNT*
Ga0066605_1022453733300004279MarineMGMRGLSDDEFIAMDNIKRAALAIYDGDYNKVESCLGEALKHVYKINT*
Ga0066605_1027634543300004279MarineMAMRELSDDEFIAMNNLLGAAFAIYDGDYNRVESCLAEALQRMHKVNK*
Ga0049081_1027740433300005581Freshwater LenticLRTNKDLNDYEFIASNNIKRAMMNLFDGDYNEVEKYLGEALECMYKLNK*
Ga0074649_109443223300005613Saline Water And SedimentLITSRSNKDLSHHEFIAMQNIKRAALALHDYNYNKVEECLGEALECIYKVNT*
Ga0075474_1004166623300006025AqueousMKSNKELNDYEFIAMNNIKRAALAIYDGDYNRVESCLSEALQCMYKVNT*
Ga0075474_1016405023300006025AqueousMRSNLELNDYEFIAMNNLKRAALALSDGDYNHVEACVGEVLECMYKVNK*
Ga0075478_1015972153300006026AqueousMRSNLELNDYEFIAMNNIKRAALAIYDGDYNKVEACLGEA
Ga0075476_1019778833300006867AqueousMKSNKELNDYEFIAMNNIKRAALAIYDGDYNKVEACLGEALECMYKVNT*
Ga0075481_1021279353300006868AqueousMRSNKELNDYEFIAMNNIKRAALAIYDGDYNKVEACLGE
Ga0070750_1039196833300006916AqueousMRSNLELNDYEFIAMNNIKRAALAIYDGDYNRVENCLAEALQCMYKVNT*
Ga0099851_109199223300007538AqueousMRSNKELNDYEFIAMNNIKRAALAIYDGDYNRVESCLSEALQCMHKVNT*
Ga0099851_130416223300007538AqueousFIAMNNIKRAALAIYDGDYNKVESCLGEALECMYKVNR*
Ga0099849_101415463300007539AqueousVKTNKELNDYEFIAMNNIKRAALAIYDGDYNRVENCLAEALQCMYKVNT*
Ga0099849_132425823300007539AqueousMMRSNKELNDYEFIAMNNLKRAALALYDGDYNHVEACVGEVLECMYKVNT*
Ga0099848_113100813300007541AqueousMMRSNSELNDYEFIAMNNIKRAALAIMDADYNKVESCLGEALECMYKVNT*
Ga0099848_127648333300007541AqueousMRSNKELNDYEFIAMNNIKRAALAIYDGDYNRVESCLSEALQCMHKV
Ga0102951_112729523300007725WaterMRSNLELNDYEFIAMNNLKRAALALTEGDYNHVEACVGEVLICMYKVNK*
Ga0099850_104944913300007960AqueousNDYEFIAMNNLKRAALALSDGDYNHVEACVGEVLECMYKVNT*
Ga0099850_106645253300007960AqueousMRSNSELNDYEFIAMNNIKRAALAIYDGDYNKVESCLGEALECMYKVNR*
Ga0102960_1001822183300009000Pond WaterMKTNKELNDYEFIAMNNLKRAALALTEGDYNHVEACVGEVLICMYKVNK*
Ga0118687_1000829973300009124SedimentMKTNKELNDYEFIAMNNLKRAALALTEGDYNHVEACVGEVLMCMYKVNK*
Ga0105097_1073035533300009169Freshwater SedimentMRTVKELNDYEFIASNNIKRAMLSLFDGEHNDVEKYLSEALECMYKLNVKT*
Ga0129348_117863423300010296Freshwater To Marine Saline GradientNLELNDYEFIAMNNLKRAALALSDGDYNHVEACLGEALECMYKVNK*
Ga0129345_130812913300010297Freshwater To Marine Saline GradientVKTNKELNDYEFIAMNNIKRAALAIYDGDYNRVENCL
Ga0129351_138453823300010300Freshwater To Marine Saline GradientMMRSNKELNDYEFIAMNNLKRAALALYDGDYNHVEACVGEVLECMYKVNK*
Ga0136656_111122933300010318Freshwater To Marine Saline GradientMRSNKELNDYEFIAMNNIKRAALAIYDGDYNRVESCLSEALQCMYKVNT*
Ga0136549_1035705923300010389Marine Methane Seep SedimentMRTIKELSDYEFIAMNNIKRAALALSDGDYNKVEASLGEALQCLYEVNK*
Ga0136549_1037846033300010389Marine Methane Seep SedimentMRSNLELNDYEFIAMNNLKRAALALSEGDYNHVEACVGEVLECMYKVN
Ga0181584_1014174123300017949Salt MarshMRSNLELNDYEFIAMNNIKRAALAIYDGDYNRVENCLAEALQCMYKVNT
Ga0181607_1051405123300017950Salt MarshMKTNKELNDYEFIAMNNIKRAALALTEGDYNHVEACLGEALECMYKVNA
Ga0181581_1025637413300017962Salt MarshMRSNLELNDYEFIAMNNIKRAALALFDGDYNHVEACLG
Ga0180431_1022587463300017987Hypersaline Lake SedimentMRSNLELNDYEFIAMNNLKRAALALSDGDYNHVEACVGEVLECM
Ga0180431_1033383563300017987Hypersaline Lake SedimentMAMRSNLELNDYEFIAMNNLKRAALALSDGDYNHVEACVGEVLECM
Ga0180431_1067280713300017987Hypersaline Lake SedimentNLELNDYEFIAMNNLKRAALALSDGDYNHVEACVGEVLECMYKVNK
Ga0180432_1017238673300017989Hypersaline Lake SedimentMAMRSNLELNDYEFIAMNNLKRAALALSEGDYNHVEACVGEVLE
Ga0180432_1034929653300017989Hypersaline Lake SedimentMAMRSNLELNDYEFIAMNNLKRAALALSDGDYNHVEACVGEVLECMYKVNK
Ga0180434_1032649773300017991Hypersaline Lake SedimentMRTIKELSDYEFIAMNNIKRAALALTDGDYNKVEASLGEALQCMYEVNK
Ga0180434_1088021433300017991Hypersaline Lake SedimentDYEFIAMNNLKRAALALSDGDYNHVEACVGEVLECMYKVNK
Ga0180434_1094322633300017991Hypersaline Lake SedimentEFIAMNNLKRAALALSDGDYNHVEACVGEVLECMYKVNK
Ga0180434_1142763333300017991Hypersaline Lake SedimentMAMRSNLELNDYEFIAMNNLKRAALALSDGDYNHVEACVGEVLECMYKVN
Ga0180430_1084318713300018065Hypersaline Lake SedimentMAMRSNLELNDYEFIAMNNLKRAALALSEGDYNHVEACVGEVLMCMYKVNQ
Ga0180433_1068862043300018080Hypersaline Lake SedimentMRSNLELNDYEFIAMNNLKRAALALYDGDYNHVEACVGEVLECMYKVNK
Ga0180433_1070878923300018080Hypersaline Lake SedimentFLMRSNLELNDYEFIAMNNLKRAALALSEGDYNHVEACVGEVLECMYKVNK
Ga0180433_1137274933300018080Hypersaline Lake SedimentMAMRSNLELNDYEFIAMNNLKRAALALYDGDYNHVEACVGEVLECMYKVNK
Ga0181593_1050041013300018423Salt MarshMRSNLELNDYEFIAMNNIKRAALALFDRDYNHVEACLGEALECMYKVNK
Ga0181591_1033214413300018424Salt MarshMRSNLELNDYEFIAMNNIKRAALALFDGDYNHVEACLGEA
Ga0181591_1068204933300018424Salt MarshMRSNLELNDYEFIAMNNIKRAALALFDGDYNHVEACLGEALECMYKVNT
Ga0181566_1007696093300018426Salt MarshMRSNLELNDYEFIAMNNIKRAALAIYDGDYNRVESCLAEALRCMYKVNT
Ga0194016_100350123300019708SedimentMRSNKELNDYEFIAMNNIKRAALAIYDGDYNKVEACLGEALECMYKVNT
Ga0194023_101388113300019756FreshwaterELNDYEFIAMNNIKRAALAIYDGDYNKVEACLGEALECMYKVNT
Ga0207193_112285963300020048Freshwater Lake SedimentVRTNKELNDYEFIASNNIKRAMLNLFEGNYNEVEKHLGDALECMYKLNVKT
Ga0181575_10009006143300020055Salt MarshMRSNLELNDYEFIAMNNIKRAALAIYDGDYNRVESCLAEALQCMYKVNT
Ga0208088_101695223300020505FreshwaterMRSNKELNDYEFIASNNIKRAMLNLFEGNHNEVEKYLGEALECMYKINK
Ga0213861_1024958123300021378SeawaterMKTTKQLNDYEFIASNNIKRAMMNLFDGDYNEVEKHLGEALACMHKLNR
Ga0222718_1047845413300021958Estuarine WaterMKTNKELNDYEFIAMNNLKRAALALTEGDYNHVEACVGEVLVCMYKVNK
Ga0222719_1005345913300021964Estuarine WaterMKTNKELNDYEFIAMNNLKRAALALTEGDYNHVEACVGEVLICMYKVNK
Ga0222719_1027670453300021964Estuarine WaterMKTNKELNDYEFIAMNNLKRAALALTEGDYNHVEACVGEVLMCMYK
Ga0212029_102449033300022063AqueousMKTTKQLNDYEFIASNNIKRAMMNLFDGDYNEVEKHLGEALACMYKLNR
Ga0196899_118393913300022187AqueousKELNDYEFIAMNNLKRAALAIYDGDYNKVEACLGEALECMYKVNT
Ga0196905_102756243300022198AqueousMRSNKELNDYEFIAMNNIKRAALAIYDGDYNRVESCLSEALQCMHKVNT
Ga0196901_107924943300022200AqueousMKTIKELNDYEFIASNNIKRAMLNLFDGDYNEVEKNLGEALSCMYKLNR
Ga0196901_118940943300022200AqueousMRSNSELNDYEFIAMNNIKRAALAIYDGDYNRVESCLSEALQCMYKVNK
Ga0255780_1013564343300022935Salt MarshFIAMNNLKRAALALTEGDYNHVEACVGEVLECMYKVNT
Ga0255764_1011397133300023081Salt MarshMRSNLELNDYEFIAMNNLKRAALALTEGDYNHVEACVGEVLECMYKVNT
(restricted) Ga0233432_10009763133300023109SeawaterMAMRELSDYEFIAMNNIKRAALAIYDGDYNKVEACLSEALKYMYKINP
(restricted) Ga0233432_1007853173300023109SeawaterFIAMDNIKRAALAVYDGDYNKAESCLSEALKYMYKINP
(restricted) Ga0233432_1012545743300023109SeawaterMKTNRELSDDEFIAMDNIKRAALAIYDGDYNKVEECLGKALECMHKVNT
(restricted) Ga0233432_1023507833300023109SeawaterMAIKELSDYEFIVMNNLLGAGFAIYDGDYNKVESCLSEALKYVYKINP
(restricted) Ga0233432_1036379913300023109SeawaterSVERNYQMRSNKELSDYEFIAMNNIKRAALAIFDGDYNKVEACLGEALKCMHKVNT
(restricted) Ga0233432_1042918943300023109SeawaterMAMRELSDDEFIAMNNIKRAALAIYDGDYNRVESCLAEA
Ga0255760_1005606943300023115Salt MarshMRSNLELNDYEFIAMNNLKRAALALSEGDYNHVEACVGEVLECMYKVNT
Ga0255768_1012057853300023180Salt MarshRSNLELNDYEFIAMNNLKRAALALTEGDYNHVEACVGEVLECMYKVNT
(restricted) Ga0255039_1006823713300024062SeawaterNHGWRSGRMAMRELSDYEFIAMNNIKRAALAIYDGDYNKVEACLSEALKYMYKINP
(restricted) Ga0233438_1008758033300024255SeawaterMRSNKELSDYEFIAMNNIKRAALAIFDGDYNKVEACLGEALECMHKVNT
Ga0208161_113282543300025646AqueousMRSNSELNDYEFIAMNNIKRAALAIYDGDYNRVESC
Ga0208161_115323233300025646AqueousMRSNKELNDYEFIAMNNIKRAALAIYDGDYNRVESCLSEALQCM
Ga0208428_1000300363300025653AqueousMRSNLELNDYEFIAMNNLKRAALALSDGDYNHVEACVGEVLECMYKVNK
Ga0208428_1000878233300025653AqueousMKSNKELNDYEFIAMNNIKRAALAIYDGDYNKVEACLGEALECMYKVNT
Ga0208162_106083033300025674AqueousVKTNKELNDYEFIAMNNIKRAALAIYDGDYNRVENCLSEALQCMYKVNT
Ga0209771_104067253300025701MarineMKTNKELNDYEFIAMNNLKRAALALTEGDYNHVEACVGEVLVCMYKVNT
Ga0209374_112113613300025705MarineMGMRGLSDDEFIAMDNIKRAALAIYDGDYNKVESCLGEALKHVYKINT
Ga0209374_116495223300025705MarineMAMRELSEYEFIAMNNIKRAALAIFDGDYNKVETCLGEALECMYKVNT
Ga0208427_101930913300025771AqueousMKSNKELNDYEFIAMNNIKRAALAIYDGDYNKVEACLGEALECM
Ga0209492_114404713300027721Freshwater SedimentMRSNKELNDYEFIASNNIKRAMLSLFDGEHNDVEKYLSEALECMYKLNR
(restricted) Ga0247833_128860513300027730FreshwaterTLQNLWRCILRTNKELNDYEFIASNNIKRAMMNLFDGDYNEVEKHLGEALACIYKINK
Ga0209536_10181458613300027917Marine SedimentAMNNLKRAALALSDGDYNHVEACVGEVLECMYKVNT
Ga0335003_0012566_2_1453300033995FreshwaterMRTNKDLNDYEFIASNNIKRAMLNLFEGNHNEVEKYLGEALECMYKIN
Ga0310130_0041868_766_9393300034073Fracking WaterVNLSRTNKDLNDYEFIAMNNIKRAALALTDADYNKVEECLSEAMESLCRARLKTVGI
Ga0310130_0074631_556_7383300034073Fracking WaterMKSWTVISVSLSRSNKELNDYEFIAMNNLKRAALAIMDKDYNKVEACLAEALVSIYKVNT
Ga0335022_0006150_7321_74523300034095FreshwaterLNDYEFIASNNIKRAMLNLFEGNHNEVEKYLGEALECMYKINK
Ga0335036_0496004_548_7603300034106FreshwaterHLHLKRIKHPCLTSQNLWRCILRTNKDLNDYEFIASNNIKRAMLNLFEGNHNEVEKYLGEALECMYKINK
Ga0335048_0084713_1831_19383300034356FreshwaterSNNIKRAMLNLFEGNHNEVEKYLGEALECMYKINK
Ga0335048_0127696_3_1373300034356FreshwaterMRTNKDLNDYEFIASNNIKRAMLNLFEGNHNEVEKYLGEALECMY
Ga0348335_107083_97_2463300034374AqueousMKSNKELNDYEFIAMNNIKRAALAIYDGDYNRVESCLSEALQCMYKVNT


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