Scaffold SI48aug10_100mDRAFT_1033347

Overview

Basic Information

• Taxon OID: 3300000324
• Scaffold ID: SI48aug10_100mDRAFT_1033347
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 48 08/11/10 100m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 894
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet 48, Vancouver Island, BC, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005012	Metagenome / Metatranscriptome	415	Y
F088272	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
SI48aug10_100mDRAFT_10333471	F088272	N/A	GTGLRASFNSDNKQTKGGIFMAVILLATSYLWINSTGYWFVAHAIEISGKNLLIISFFIGFLSTTKSISELNTNS*
SI48aug10_100mDRAFT_10333472	F005012	AGG	MNLEVIKTILISLLLFPSIVFANDFELLCKGEEAKYLEEDPNSKEVTTKVIGIQLYEEGMRLDGEWFDNKSDLTEDYSLERSYVKSKDNITGVRNFSTNAXXEGRVIHTSKIDKVEINILTNDIFWTHEFNRVDKTNNEAKTIYAFRKNFQGKCK*