Scaffold Cc83DRAFT_1000986

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Cc83DRAFT_1000986

Scaffold Cc83DRAFT_1000986

Overview

Basic Information
Taxon OID	3300000302 Open in IMG/M
Scaffold ID	Cc83DRAFT_1000986 Open in IMG/M
Source Dataset Name	CECUM_8-3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University College Cork
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4623
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Birds → Digestive System → Ceca → Unclassified → Chicken Cecum → Chicken Cecum Microbial Communities From Ireland

Source Dataset Sampling Location
Location Name	Ireland: Cork
Coordinates	Lat. (^o)	51.897783	Long. (^o)	-8.470613	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F072949	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Cc83DRAFT_10009865	F072949	GGAG	MAKKRNNKVAKVVVDKNAAQFMRTAQNLARKGKTNKKLNGRNANPRAKKYAIA*

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