NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold NODE_c0740273

Scaffold NODE_c0740273


Overview

Basic Information
Taxon OID3300000156 Open in IMG/M
Scaffold IDNODE_c0740273 Open in IMG/M
Source Dataset NameSugar cane bagasse incubating bioreactor microbial communities from Sao Carlos, Brazil, that are aerobic and semianaerobic
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterAmbry Genetics
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13050
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (61.90%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Grass → Composting → Bioreactor → Sugar Cane Bagasse Incubating Bioreactor → Sugar Cane Bagasse Incubating Bioreactor Microbial Communities From Sao Carlos, Brazil, That Are Aerobic And Semianaerobic

Source Dataset Sampling Location
Location NameSao Carlos, Brazil
CoordinatesLat. (o)-22.080556Long. (o)-48.997778Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005718Metagenome / Metatranscriptome392Y
F009024Metagenome / Metatranscriptome324Y
F057418Metagenome136Y
F070398Metagenome / Metatranscriptome123Y
F095991Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
NODE_074027310F005718GAGGMIVELADNSDTRFEMAKHKKRSATVNRKLGISISCRVQKPVLKDLDAYRKSLKLSRSAALVKLATDHLARLKEPAEKLWEGAVDHMFPAGIDAKGHDPK*
NODE_074027311F009024AGAAGMHNSDYYRAQAAEYRKLAGAAEDPAAKIEFLELAEACEEAADKIDDCRASG*
NODE_074027312F057418AGGAGMPPVLAHLRQSYLALGILTAGGVVLWAAGWEMIGVLVTVVGGFGLFWGLIAAADAPADTARDNVIKAVALSDNDALGLSEGEAELVTLIRDRNIDPSSIVAKIQESK*
NODE_074027320F095991GGAGVRIACKIIPSGYATVVRDYARGNLDEAEFWSELTALGYSSLEIEWHIGNPGKRLDVRGTQMDEELKDLFFGAIGNLPAERQVAAQRWLKERVVLAKIAEQLIADAGAELPPELQGA*
NODE_07402739F070398GAGMKKPCVVLACVAIASPTHAGFFERLHNNIDERVRELCAQKPDICRKLEAAQKRNADVTSQNSLGTDPINERNRDK*
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Institute for Fundamental Biomedical Research
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