Scaffold DelMOSpr2010_c10010271

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10010271
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4879
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011124	Metagenome / Metatranscriptome	295	Y
F016061	Metagenome	250	Y
F061818	Metagenome / Metatranscriptome	131	N
F067203	Metagenome / Metatranscriptome	126	Y
F074150	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_1001027113	F016061	AGGAG	MFIKVKLTNTLNAIAGRKPTIDRTNIKTYNKRGKYYVGASASGKFLQVNDGKHIRYYGNPFWNLYRVVSKNGSDFVIHEARR*
DelMOSpr2010_1001027114	F067203	GGAG	MTITWDEIEHYELSEKDQRYMAMYGCTQDDMLCMLNDPINFIGGHETLAISILSDAQEVMLYDPEKARQLINKAKYVIRHLRDIDL*
DelMOSpr2010_100102712	F011124	AGGAG	MFNPDKSYSVLVWDMPVSVWDDDADDYIRNEDGSIKLFSLPNYDYSYICEGVDVDDLHERDEGDDYNDNT*
DelMOSpr2010_100102713	F074150	GGAG	MPKYEVTRSYTVACVATVEAESVDQAKRMAFESDLYWKEYDGDYHTEVDVEEIDNV*
DelMOSpr2010_100102715	F061818	AGGAG	MTKSQEFWAWIDQCPDGVYVNHDFTDDEDDQKIHVFGFAVPKEIDDD*