Scaffold DelMOSum2010_c10004652

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10004652
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 9816
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (86.36%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014071	Metagenome / Metatranscriptome	266	Y
F018814	Metagenome	233	Y
F026159	Metagenome	199	Y
F028524	Metagenome / Metatranscriptome	191	Y
F084852	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_1000465219	F028524	AGG	MINTTNEFKATVKEFVNKLTTIENEMTILRQDRSELFTEMKSKLDPRSFRAAVKIHNLQKSTPDQTSLSRILEVLETAE*
DelMOSum2010_1000465220	F084852	GAGG	MRDLKRFEEDIQKILDKFQFEGETRRKIFSQLMEYASDQDQFNIEIEAGNPQKGSQND*
DelMOSum2010_1000465221	F014071	GGAGG	MATRPGRLLDKTFTSFTEASGRLEDTMGWITAAEELAHEVQPGCKAEVTLHLLGKVLEKARTELDQASEDLAIEVFGK*
DelMOSum2010_100046523	F026159	AGGA	MKKFNLIDIVTMLGIAASLLLVLMFASGCSMKFYKKSPEDVRKCCERVSLHQKEMDKFARYCKVALFLANSENTKEVGTGVRKGARDAVNVCKFVFDVTTDKDLLSAGDHQDYYKVRSYIYKDPRNNGGWNPPLCDPAEIHCEEF*
DelMOSum2010_100046526	F018814	AGAAGG	MDATKSYIKIHGMTEGEAEDFEYDFDISSSDLLTELVPDLDNWGDLGWMELEEYEYHAQSQTMNLLLETKWTSPTEWLRNASLGSVYFENKLITMATIQKDETCVTGFAAMDGEVLQHKNIFEMEPEEVGRYYDDEQLNYELDDLDNQIWDSIGQFLSVCTQFYLTESEDGNE*