Scaffold RmDRAFT_c016605

Overview

Basic Information

• Taxon OID: 3300000064
• Scaffold ID: RmDRAFT_c016605
• Source Dataset Name: Bovine rumen microbial communities (NEW) from Vernon, TX, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Texas A and M University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3420
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen → Bovine Rumen Microbial Communities (New) From Vernon, Tx, Usa

Source Dataset Sampling Location

• Location Name: Vernon, Texas, USA
• Coordinates
  • Lat. (^o): 34.154
  • Long. (^o): -99.264

Associated Families

Family	Category	Number of Sequences	3D Structure?
F082826	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
RmDRAFT_0166054	F082826	N/A	MANKYTIEFNYNASIVVDVEGEFHDEGEALDKAREIAEDADINEFTIGEERESKILNVR*