3300000064: Bovine rumen microbial communities (NEW) from Vernon, TX, USA

Overview

Basic Information

• IMG/M Taxon OID: 3300000064
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0051259 | Gp0053974 | Ga0010805
• Sample Name: Bovine rumen microbial communities (NEW) from Vernon, TX, USA
• Sequencing Status: Permanent Draft
• Sequencing Center: Texas A and M University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 37196857
• Sequencing Scaffolds: 1
• Novel Protein Genes: 1
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Bovine Rumen Microbial Communities (New) From Vernon, Tx, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen → Bovine Rumen Microbial Communities (New) From Vernon, Tx, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: Vernon, Texas, USA
• Coordinates
  • Lat. (^o): 34.154
  • Long. (^o): -99.264
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F082826	Metagenome / Metatranscriptome	113	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
RmDRAFT_c016605	All Organisms → Viruses → Predicted Viral	3420

Sequences

Scaffold ID	Protein ID	Family	Sequence
RmDRAFT_c016605	RmDRAFT_0166054	F082826	MANKYTIEFNYNASIVVDVEGEFHDEGEALDKAREIAEDADINEFTIGEERESKILNVR*