NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2206182271

Scaffold 2206182271


Overview

Basic Information
Taxon OID2199352031 Open in IMG/M
Scaffold ID2206182271 Open in IMG/M
Source Dataset NameCave microbial community (Speleothem B)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterArizona Genomics Institute
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)521
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Speleothem And Rock Wall Surfaces → Speleothem And Rock Wall Surfaces Microbial Communities From Kartchner Caverns, Benson, Arizona, Usa

Source Dataset Sampling Location
Location NameUSA: Arizona
CoordinatesLat. (o)31.837801Long. (o)-110.350292Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052268Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
2207823027F052268N/AKGYPGLPGTWRGMPYDFVRGGAGLAIPGLPAEVGGCLEGT
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