Scaffold 2199816734

Overview

Basic Information

• Taxon OID: 2199352004
• Scaffold ID: 2199816734
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6242
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (95.65%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F001562	Metagenome / Metatranscriptome	670	Y
F002245	Metagenome / Metatranscriptome	578	Y
F002598	Metagenome / Metatranscriptome	544	Y
F004051	Metagenome / Metatranscriptome	455	Y
F004840	Metagenome / Metatranscriptome	421	Y
F007263	Metagenome / Metatranscriptome	354	Y
F015730	Metagenome / Metatranscriptome	252	Y
F020168	Metagenome / Metatranscriptome	225	Y
F029434	Metagenome / Metatranscriptome	188	Y
F050376	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
2199990784	F004051	GAGG	MTINDKLYQVGDLFTTLKSKKTGVIKEIHPQASGSVRVLLEMPSKETRWTSVSAKTLLGA
2199990786	F002245	AGG	MSNLMKVPHTVVFEAIIDLDKIPASLLPALIALDKSSIEQMCKEATLHALGMSNVLPLANDNNTWAEVTIKGDN
2199990787	F020168	GAG	MYDVIGSVIGIILIAFLCSPLVLAVYMWRGAKIDSDNDGKDDVPYRWEKQ
2199990791	F004840	AGGA	MYKITCAYDSNAPHWSAEYESEFGAWENFFKFTDWGFADEYSTVNIYTPTGKCYTKVFYRTGMVSVK
2199990793	F007263	AGG	MITKDYIDQTEFYLVKDEQHFCCDESQFRYVCKAHGEQMDCYFCGFDYDQDCEEQH
2199990794	F002598	AGAAGG	MATKLYTIESLLVGQNYRSRNRHFAGEIVSAKPRPEIWYGDKTEAFLIEIRTGGLRNKFATVAVKVGE
2199990795	F001562	GAGG	MKSQFEKDLEIKESFIDFLNDLYPTVKIGYSTFTPAEILECCDPVAFAIGLVEHEDYLAELEEE
2199990796	F029434	AGG	MKRYTFGVWLDIDAEDEEMAISLFDSVVKNAFVSDSYCFEWKEVADEIAV
2199990797	F000447	AGGAGG	MGYVEIFRIDNEGAGWVDLSEATPDELLDLEIGLFQEGAL
2199990798	F050376	AGG	MTLDEYKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAD
2199990803	F015730	AGGAG	MLTQKTLDAIVYEYQHGGVKSNHPELTTYERKALLKHLFSLPTYCACCVR