Scaffold FOassembled-_contig00002

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold FOassembled-_contig00002

Scaffold FOassembled-_contig00002

Overview

Basic Information
Taxon OID	2162886015 Open in IMG/M
Scaffold ID	FOassembled-_contig00002 Open in IMG/M
Source Dataset Name	Grass soil microbial communities from Rothamsted Park, UK - FO (Mercury 0.02g/kg) assembled
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	454 Life Sciences
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	160135
Total Scaffold Genes	129 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	89 (68.99%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location
Location Name	United Kingdom: Rothamsted, Harpenden
Coordinates	Lat. (^o)	51.804241	Long. (^o)	-0.372114	Alt. (m)		Depth (m)	0 to .21
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F063932	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
FOassembled-_0002.00003440	F063932	AGG	MVIQTNPEVFSGRLPVHTVTSIDRSRGIVTLSGSDGTSLNVLLNSWGTIEATQPVIGTRVQLLEND

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