Scaffold RmDRAFT_ConsensusfromContig236396_1967628

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold RmDRAFT_ConsensusfromContig236396_1967628

Scaffold RmDRAFT_ConsensusfromContig236396_1967628

Overview

Basic Information
Taxon OID	2075704000 Open in IMG/M
Scaffold ID	RmDRAFT_ConsensusfromContig236396_1967628 Open in IMG/M
Source Dataset Name	Bovine rumen microbial communities from Vernon, TX, USA, Sample 511
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Texas A and M University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	648
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen → Bovine Rumen Microbial Communities From Vernon, Tx, Usa

Source Dataset Sampling Location
Location Name	Vernon, Texas
Coordinates	Lat. (^o)	34.154	Long. (^o)	-99.264	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F098660	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
RmDRAFT_12712920	F098660	AGGAG	MDMTMAEKRNLLERIRQLALIDVLKKEDRDNIYRVCMVACDREMARLKEEK

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