NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold MGR_F548DK202JYSTA

Scaffold MGR_F548DK202JYSTA


Overview

Basic Information
Taxon OID2044078002 Open in IMG/M
Scaffold IDMGR_F548DK202JYSTA Open in IMG/M
Source Dataset NameMiscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Illinois, Urbana-Champaign
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)533
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass, Maize And Miscanthus Rhizosphere → Switchgrass, Maize And Miscanthus Rhizosphere Microbial Communities From University Of Illinois Energy Farm, Urbana, Il

Source Dataset Sampling Location
Location NameUIUC Energy Farm, Urbana, Illinois 61801
CoordinatesLat. (o)40.109Long. (o)-88.204Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081188Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
MGR_1091720F081188GAGGVDVQRLRSSDNADFERAVRNFVWTVTWHPALKDGAPVEAWTQMLFPPQKP

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