3300004958: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI047_120m_RNA (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300004958
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0111047 | Ga0066614
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI047_120m_RNA (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 25514236
• Sequencing Scaffolds: 5
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Alt. (m): N/A
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005649	Metagenome / Metatranscriptome	394	Y
F029239	Metagenome / Metatranscriptome	189	Y
F066454	Metagenome / Metatranscriptome	126	N
F090440	Metagenome / Metatranscriptome	108	N
F105334	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0066614_100784	Not Available	512
Ga0066614_104020	Not Available	556
Ga0066614_104412	Not Available	546
Ga0066614_105351	Not Available	604
Ga0066614_166313	Not Available	631

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0066614_100784	Ga0066614_1007842	F105334	MTKVAFHRAGIPFFDRDTFLTPFDKIFDQMIGSQFPDITKSVGVNPYA
Ga0066614_104020	Ga0066614_1040201	F090440	GNEISGLKLATDLRLKRIYHCRITDVGEDYDLRIIIRKSIGG*
Ga0066614_104412	Ga0066614_1044121	F090440	GGNEISGLKLATGLRLKRVYHCRITDVGEDDDLRIIIRKSIGG*
Ga0066614_105351	Ga0066614_1053512	F029239	MSRKKRLNNQNSDKSLAGLVIDWQFANAEMGFDNFVEPMISDYQPTYANA*
Ga0066614_166313	Ga0066614_1663132	F005649	MLFDNKVQRSLSKTATKGSQNQNGDKSLQGLVIDWQFANSEMVSNDFVEPVSNYEPTYAYA*
Ga0066614_177376	Ga0066614_1773761	F066454	MSIRLDVLILINSGVTDRSEIMERLGINIRSVSNCVRFLVKEGWVEYSREPVSAVGSVGYRITQVGIDKIKASTVDDYRKSPQRKVPDYEVMRSHLGVG