NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F102140

Metagenome Family F102140

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F102140
Family Type Metagenome
Number of Sequences 102
Average Sequence Length 70 residues
Representative Sequence QPFTIQRSWKKSPARHPFEYDCMENPRQEDFENAYYVRERYRPICMRVEGEGMAPSKMVCRRPQ
Number of Associated Samples 90
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.98 %
% of genes from short scaffolds (< 2000 bps) 0.98 %
Associated GOLD sequencing projects 85
AlphaFold2 3D model prediction Yes
3D model pTM-score0.27

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil
(7.843 % of family members)
Environment Ontology (ENVO) Unclassified
(46.078 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(48.039 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 4.35%    β-sheet: 15.22%    Coil/Unstructured: 80.43%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.27
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 102 Family Scaffolds
PF13472Lipase_GDSL_2 20.59
PF07715Plug 1.96
PF00264Tyrosinase 1.96
PF13683rve_3 1.96
PF13240zinc_ribbon_2 1.96
PF12833HTH_18 0.98
PF02746MR_MLE_N 0.98
PF00069Pkinase 0.98
PF02230Abhydrolase_2 0.98
PF03929PepSY_TM 0.98
PF13450NAD_binding_8 0.98
PF07676PD40 0.98
PF13795HupE_UreJ_2 0.98
PF04909Amidohydro_2 0.98
PF01554MatE 0.98
PF00872Transposase_mut 0.98
PF01253SUI1 0.98
PF01494FAD_binding_3 0.98
PF10647Gmad1 0.98
PF02348CTP_transf_3 0.98
PF11700ATG22 0.98
PF00400WD40 0.98
PF02909TetR_C_1 0.98
PF05368NmrA 0.98
PF01557FAA_hydrolase 0.98

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 102 Family Scaffolds
COG0515Serine/threonine protein kinaseSignal transduction mechanisms [T] 3.92
COG06542-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductasesEnergy production and conversion [C] 1.96
COG4948L-alanine-DL-glutamate epimerase or related enzyme of enolase superfamilyCell wall/membrane/envelope biogenesis [M] 1.96
COG0023Translation initiation factor 1 (eIF-1/SUI1)Translation, ribosomal structure and biogenesis [J] 0.98
COG0578Glycerol-3-phosphate dehydrogenaseEnergy production and conversion [C] 0.98
COG0644Dehydrogenase (flavoprotein)Energy production and conversion [C] 0.98
COG0665Glycine/D-amino acid oxidase (deaminating)Amino acid transport and metabolism [E] 0.98
COG1083CMP-N-acetylneuraminic acid synthetase, NeuA/PseF familyCell wall/membrane/envelope biogenesis [M] 0.98
COG1212CMP-2-keto-3-deoxyoctulosonic acid synthetaseCell wall/membrane/envelope biogenesis [M] 0.98
COG1309DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmATranscription [K] 0.98
COG1861Spore coat polysaccharide biosynthesis protein SpsF, cytidylyltransferase familyCell wall/membrane/envelope biogenesis [M] 0.98
COG3182PepSY-associated TM regionFunction unknown [S] 0.98
COG3295Uncharacterized conserved proteinFunction unknown [S] 0.98
COG3328Transposase (or an inactivated derivative)Mobilome: prophages, transposons [X] 0.98


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Phylogeny

NCBI Taxonomy

NameRankTaxonomyDistribution
UnclassifiedrootN/A100.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300031940|Ga0310901_10248192Not Available729Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil7.84%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil7.84%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere6.86%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil5.88%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere5.88%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere4.90%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere3.92%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands2.94%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil2.94%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil2.94%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.94%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere2.94%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere2.94%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere2.94%
CompostEngineered → Solid Waste → Zoo Waste → Composting → Unclassified → Compost2.94%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil1.96%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere1.96%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.96%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.96%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere1.96%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.96%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.96%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.98%
SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment0.98%
FreshwaterEnvironmental → Aquatic → Freshwater → Pond → Sediment → Freshwater0.98%
Marine EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine Estuarine0.98%
WetlandEnvironmental → Aquatic → Marine → Wetlands → Sediment → Wetland0.98%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.98%
CompostEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Compost0.98%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil0.98%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Agricultural Soil0.98%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.98%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.98%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen0.98%
SoilEnvironmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil0.98%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.98%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.98%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.98%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.98%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.98%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.98%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere0.98%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2228664021Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000787Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300001213Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)EnvironmentalOpen in IMG/M
3300001372YB-Back-sedEnvironmentalOpen in IMG/M
3300002210Compost microbial communities from Sao Paulo Zoo, Brazil - ZC3b day 78EngineeredOpen in IMG/M
3300004009Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D2EnvironmentalOpen in IMG/M
3300004058Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D1EnvironmentalOpen in IMG/M
3300004065Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWC_D2EnvironmentalOpen in IMG/M
3300004155Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Low cellulose week 11EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300005060Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 15 soap2EngineeredOpen in IMG/M
3300005061Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 30 soap2EngineeredOpen in IMG/M
3300005331Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaGHost-AssociatedOpen in IMG/M
3300005338Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2Host-AssociatedOpen in IMG/M
3300005340Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaGEnvironmentalOpen in IMG/M
3300005341Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaGEnvironmentalOpen in IMG/M
3300005353Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaGHost-AssociatedOpen in IMG/M
3300005354Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaGHost-AssociatedOpen in IMG/M
3300005355Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaGHost-AssociatedOpen in IMG/M
3300005364Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaGHost-AssociatedOpen in IMG/M
3300005365Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaGEnvironmentalOpen in IMG/M
3300005367Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaGHost-AssociatedOpen in IMG/M
3300005543Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaGHost-AssociatedOpen in IMG/M
3300005549Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaGEnvironmentalOpen in IMG/M
3300005564Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaGHost-AssociatedOpen in IMG/M
3300005577Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2Host-AssociatedOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300006196Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1Host-AssociatedOpen in IMG/M
3300006969Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3Host-AssociatedOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009095Agricultural soil microbial communities from Utah to study Nitrogen management - Steer compost 2015EnvironmentalOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009551Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaGHost-AssociatedOpen in IMG/M
3300010036Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300011000Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t6i015EnvironmentalOpen in IMG/M
3300011119Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaGHost-AssociatedOpen in IMG/M
3300011410Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT222_2EnvironmentalOpen in IMG/M
3300011436Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT642_2EnvironmentalOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300012896Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2EnvironmentalOpen in IMG/M
3300012906Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1EnvironmentalOpen in IMG/M
3300012908Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1EnvironmentalOpen in IMG/M
3300012940Organic Plus compost microbial communities from Emeryville, California, USA - Original compost - Organic plus compost (OP)EnvironmentalOpen in IMG/M
3300013104Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaGHost-AssociatedOpen in IMG/M
3300013105Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaGHost-AssociatedOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014745Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaGHost-AssociatedOpen in IMG/M
3300015200Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)EnvironmentalOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300018081Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1EnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300019362Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)EnvironmentalOpen in IMG/M
3300021082Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redoEnvironmentalOpen in IMG/M
3300022892Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S169-409R-5EnvironmentalOpen in IMG/M
3300022899Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S016-104C-6EnvironmentalOpen in IMG/M
3300023069Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S049-202B-5EnvironmentalOpen in IMG/M
3300023071Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S019-104C-5EnvironmentalOpen in IMG/M
3300023073Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S154-409C-5EnvironmentalOpen in IMG/M
3300023266Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S220-509R-4EnvironmentalOpen in IMG/M
3300025925Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025940Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025941Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026023Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026075Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026142Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026476Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 PR6EnvironmentalOpen in IMG/M
3300027395Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 PM (SPAdes)Host-AssociatedOpen in IMG/M
3300031538Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1EnvironmentalOpen in IMG/M
3300031548Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3Host-AssociatedOpen in IMG/M
3300031854Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1EnvironmentalOpen in IMG/M
3300031901Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2Host-AssociatedOpen in IMG/M
3300031903Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1Host-AssociatedOpen in IMG/M
3300031918III_Fen_N3 coassemblyEnvironmentalOpen in IMG/M
3300031938Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1EnvironmentalOpen in IMG/M
3300031940Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2EnvironmentalOpen in IMG/M
3300031995Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2Host-AssociatedOpen in IMG/M
3300031996Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2EnvironmentalOpen in IMG/M
3300032012Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3EnvironmentalOpen in IMG/M
3300032126Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2Host-AssociatedOpen in IMG/M
3300032783Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
ICCgaii200_064447422228664021SoilVTIEDPEYYERAFTIKRAWNKSSATHPFEYDCMENPRQEDFENAYYVRDRYQATCMRVKGEGLQLSRMVCRRPEE
JGI11643J11755_1143354423300000787SoilVERFTPSADGASIDIATTIDDPEYYSQPFTIQRSWKKSPARHPFEYDCMENPRQEDFENAYYLXERYRPICMRVEGXGRAPSXMVCRRPQ*
JGI10216J12902_10447352913300000956SoilSWKKSPARHPFEYDCMENPREEDFENAYYVRERYRPVCMRVEGEGMAPSKMVCRRPQ*
JGIcombinedJ13530_10201424713300001213WetlandEYYTRPFPIKRSWKKSPARHPFEYDCMENPRQEDFENAYYIREQYKPVCMRVEGEGMAPSKMVCKREP*
YBBDRAFT_114800943300001372Marine EstuarineFTIKRSWKKSPARHPFEYDCMENPRQEDFENAYYVRERYRPICMRVEGEGMAPSKMVCQRPE*
metazooDRAFT_134057813300002210CompostIPIDDPEYYTEPFTIHRSWRRAEARHQHEYDCMENPRQEDFANAYYVHDRYRPTCMRVQGEGMEPSRMVCRREEQ*
Ga0055437_1009711213300004009Natural And Restored WetlandsQRSWKKSPARHPFEYDCMENPRQEDFENAYYLRERYRPVCMRVEGKGMAPSQMVCPRPR*
Ga0055498_1004288423300004058Natural And Restored WetlandsEYYDAPFTIKRSWKKSAARHPFEYDCMENPRQEDFANAYYVRERYRPTCMRVEGEGMALSSVVCNRPQE*
Ga0055481_1007479213300004065Natural And Restored WetlandsIKRSWKKSQARHPFEFDCMENPRQEDFENAYYVRERYRPTCMRVEGKGMELSRMVCRRPE
Ga0066600_1045832723300004155FreshwaterDGSIDIETTIEDPEYYSQPFTIKRSWKQSPVRHPYEYDCMENPRQEDFENAYYVRERYRPVCMRVEGEGMAPSKMVCGREK*
Ga0062589_10123055523300004156SoilVERLTPSADGIEIEVTIEDPEYYERPFTIKRAWNKSSATHPFEYDCMENPRQEDFENAYYVRDRYQATCMRVKGEGLQLSRMVCRRPEE*
Ga0070920_135461923300005060CompostTSPALHTVERFRLSEDGNRIEIEVTITDPEYYQEPFTIKRAWRRSEARHPFEYDCMENPREEDFENAYYVRDRYRPTCMRVEGEGMEPSRVVCRRRDEE*
Ga0070921_139288523300005061CompostSWRRAEARHQHEYDCMENPRQEDFANAYYVHDRYRPTCMRVQGEGMEPSRMVCRREEQ*
Ga0070670_10215634013300005331Switchgrass RhizosphereQRSWKKSPARHPFEYDCMENPRQEDFENAYYVRERYRPICMRVEGEGMAPSKMVCRRPE*
Ga0068868_10034220823300005338Miscanthus RhizosphereQRSWKKSPARHPFEYDCMENPRQEDFENAYYVRERYRPICMRVEGEGMAPSKMVCRRPQ*
Ga0070689_10071803123300005340Switchgrass RhizosphereGSIDIATTIDDPEYYSQPFTIQRSWKKSPARHPFEYDCMENPRQEDFENAYYVRERYRPVCMRVEGEGMAPSKMVCRL*
Ga0070691_1070332323300005341Corn, Switchgrass And Miscanthus RhizosphereELDARGQPTSSALRTVERLTPSAGGIEIEVTIEDSEYYERAFTIKRAWNKSSAAHPLEYDCTENPRQEDFENAYYVRDRYQPTCMRVKGEGLQLSRMVCRRPEER*
Ga0070669_10009701113300005353Switchgrass RhizospherePFTIQRSWKKSPARHPFEYDCMENPRQEDFENAYYVRERYRPLCMRVEGEGMAPSKMVCRRPQ*
Ga0070675_10094782213300005354Miscanthus RhizosphereSPARHPFEYDCMENPRQEDFENAYYLHDRYRPICMRVEGVGRAPSKMVCRRAQ*
Ga0070671_10132539413300005355Switchgrass RhizosphereMTRSADGSSLDMEVTITDPEYYERPFTIKRSWKRSDARHPFEFDCMENPRQEDFENAYYVRDRYRPTCMRVEGEGLEPSKVVCKR*
Ga0070673_10126464813300005364Switchgrass RhizosphereQPFTIQRSWKKSPARHPFEYDCMENPRQEDFENAYYVRERYRPLCMRVEGEGMAPSKMVCRRPQ*
Ga0070688_10122981013300005365Switchgrass RhizosphereFTIQRSWKKSPARHPFEYDCMENPRQEDFENAYYVRERYRPLCMRVEGEGRAPSKMVCRRPQ*
Ga0070667_10074883913300005367Switchgrass RhizosphereWKKSPARHPFEYDCMENPRQEDFENAYYVNERYRPICMRVEGEGRAPSKMVCRRSQ*
Ga0070672_10004376513300005543Miscanthus RhizospherePFTIQRSWKKSPARHPFEYDCMENPRQEDFENAYYVNERYRPICMRVEGEGRAPSKMVCRRSQ*
Ga0070704_10159444923300005549Corn, Switchgrass And Miscanthus RhizosphereIDIATTIDDPEYYSQPFTIQRSWKKSPARHPFEYDCMENPRQEDFENAYYVRDRYQPTCMRVKGEGLQLSRVVCRRPEE*
Ga0070664_10185060613300005564Corn RhizosphereSWKKSPARHPFEYDCMENPRQEDFENAYYLNERYRPICMRVEGEGRAPSKMVCRRR*
Ga0068857_10087263923300005577Corn RhizosphereTIDDPEYYSQPFTIQRSWKKSPARHPFEYDCMENPRQEDFENAYYVRERYRPVCMRVEGEGMAPSKMVCRL*
Ga0068859_10110150013300005617Switchgrass RhizosphereQRSWKKSPARHPFEYDCMENPRQEDFENAYYLNERYRPICMRVEGQGRAPSKMVCRRPE*
Ga0068863_10049457913300005841Switchgrass RhizosphereWKKSPARHPFEYDCMENPRQEDFENAYYVRERYRPVCMRVEGEGMAPSKMVCRL*
Ga0075422_1027489613300006196Populus RhizosphereALHTVERLTPSADGIEIEVTIEDPEYYERAFTIKRAWNKSSATHPFEYDCMENPRQEDFENAYYVRDRYQATCMRVKGEGLQLSRMVCRRPEE*
Ga0075419_1043890123300006969Populus RhizosphereAEGIEIEVTIEDPEYYERAFTIKRAWNKSSATHPFEYDCMENPRQEDFENAYYVRDRYQPTCMRVKGEGLQLSRVVCRRPEE*
Ga0111539_1341824213300009094Populus RhizosphereQRSWKKSPARHPFEYDCMENPRQEDFENAYYVRERYRPLCMRVEGEGRAPSKMVCRRLQ*
Ga0079224_10310031523300009095Agricultural SoilPEFYSEPFTIQRSWKRAEGRHQHEYDCMENPREEDFHNAYYVHDRYRPTCMRVQGEGMEPSRMVCRHEDR*
Ga0105245_1234968423300009098Miscanthus RhizosphereWKKSPARHPFEYDCMENPRQEDFENAYYVRERYRPICMRVEGEGMAPSKMVCRRPQ*
Ga0105238_1056890023300009551Corn RhizosphereEDPEYYTRPFTIQRSWKKSPARHPFEYDCMENPRQEDFENAYYVNERYRPICMRVEGEGRAPSKMVCRRPQ*
Ga0105238_1247872523300009551Corn RhizosphereLTLSADGNSIDIETTVEDPEYYTKPFVIKRSWKKSAARHPFEYDCMENPRQEDFENAYYVREAYKPVCMRVEGEGMAPSKMVCRRPE*
Ga0126305_1020083913300010036Serpentine SoilSGIDIEVTITDAEYYDAPFTIKRAWKRSAASHPLEYDCIENPRQEDFANAYYVRDRYRPTCMRVKGEGAELSRMVCRRSED*
Ga0134128_1092749113300010373Terrestrial SoilDIETTIEDPEYYTHPFVINRSWKKSAARHPFEYDCMENPRQEDFENAYYVRERYRPICMRVEGEGMAPSKMLCRRSD*
Ga0105239_1104503213300010375Corn RhizosphereSIDIETTIEDPEYYTHPFVINRSWKKSAARHPFEYDCMENPRQEDFENAYYVRERYRPICMRVEGEGVALSKMVCAVRNRALQ*
Ga0134127_1012533413300010399Terrestrial SoilKPFTIQRSWKKSPARHPFEYDCMENPRQEDFENAYYVNERYRPICMRVEGEGRAPSKMVCRRSQ*
Ga0134127_1326969623300010399Terrestrial SoilIEDSEYYERAFTIKRAWNKSSAAHPLEYDCTENPRQEDFENAYYVRDRYQPTCMRVKGEGLQLSRMVCRRPEER*
Ga0138513_10002345623300011000SoilQPFTIQRSWKKSPARHPFEYDCMENPRQEDFENAYYVRERYRPICMRVEGEGMAPSKMVCRRPQ*
Ga0105246_1070714213300011119Miscanthus RhizosphereIQRSWKKSPARHPFEYDCMENPRQEDFENAYYLNERYRPICMRVEGEGRAPSKMVCRRR*
Ga0137440_101142323300011410SoilLTPEYYDAPFTIKRSWKKSAARHPFEYDCMENPRQEDFENAYYVRERYRPTCMRVAGEGMALSKMVCRRPEE*
Ga0137458_118520823300011436SoilVGRDLEVTITDPEYYSEPVHIKRSWKQSASRHLLEYDCMENPRQEDFENAYYVREQYRPVCYRVEGKGMELSRMVCERPEERASP*
Ga0150984_10878528633300012469Avena Fatua RhizosphereIQRSWKKSLARHPYEYDCMENPREEDFENAYYLRERYRPICMRVEGKGMAPSRMVCRRPQ
Ga0157303_1024024213300012896SoilQRSWKKSPARHPFEYDCMENPRQEDFENAYYVNERYRPICMRVEGQGRAPSKMVCRRQE*
Ga0157295_1000883313300012906SoilTIEDPEYYTQPLTIQRSWKKSPARHPFEYDCMENPRQEDFENAYYVRERYRPLCMRVEGEGMAPSKMVCRRPQ*
Ga0157295_1033981813300012906SoilIEDPEYYERPFTIKRAWNKSSATHPFEYDCMENPRQEDFENAYYVRDRYQATCMRVKGEGLQLSRMVCRRSEE*
Ga0157286_1018926523300012908SoilAWNKSSATHPFEYDCMENPRQEDFENAYYVRDRYRPTCMRVKGEGLQLSRMVCRRPEE*
Ga0164243_1088930423300012940CompostWNRSAATHPLEYDCMENPRQEDFENAYYVRDRYQPTCMRVKGEGAQLSRVVCRRPEE*
Ga0157370_1178939323300013104Corn RhizosphereKKSLARHPFEYDCMENPRQEDFENAYYVRDRYRPVCMRVEGTGMELSRMVCRREP*
Ga0157369_1071945313300013105Corn RhizosphereIDIETTIEDPEYYSQPFSIKRSWKKSPARHPFEYDCMENQRQEDFENAYYVRERYRPVCMREEGEGMAPSKLVCRQQE*
Ga0157374_1091273923300013296Miscanthus RhizosphereQPFTIQRSWKKSPARHPFEYDCMENPRQEDFENAYYLNERYRPICMRVEGEGRAPSKMVCRRR*
Ga0157374_1173688213300013296Miscanthus RhizosphereRMTRSADGSSLDMEVTITDPEYYERPFTIKRSWKRSDARHPFEFDCMENPRQEDFENAYYVRDRYRPTCMRVEGEGLEPSKVVCKR*
Ga0157374_1176915813300013296Miscanthus RhizosphereRSWKKSPARHPFEYDCMENPRQEDFENAYYVRERYRPICMRVEGEGMAPSKMVCRRPE*
Ga0157375_1366527913300013308Miscanthus RhizosphereKSPARHPFEYDCMENPRQEDFENAYYVRERYRPLCMRVEGEGMAPSKMVCRRPQ*
Ga0163163_1010502643300014325Switchgrass RhizosphereINRSWKKSAARHPFEYDCMENPRQEDFENAYYVRERYRPICMRVEGEGVALSKMVCAVRNRALQ*
Ga0163163_1052732133300014325Switchgrass RhizosphereKSPARHPFEYDCMENPRQEDFENAYYLNERYRPICMRVEGEGRAPSKMVCRRR*
Ga0157377_1141553613300014745Miscanthus RhizosphereSPARHPFEYDCMENPRQEDFENAYYVRERYRPLCMRVEGEGLAPSKMVCRRPQ*
Ga0157377_1150055423300014745Miscanthus RhizosphereFTIKRAWNKSSATHPFEYDCMENPRQEDFENAYYVRDRYQPTCMRVKGEGLQLSRMVCRRPEE*
Ga0173480_1015186913300015200SoilYYSQPFTIQRSWKKSPARHPFEYDCMENPRQEDFENAYYVRERYRPVCMRVEGEGMAPSKMVCRL*
Ga0132256_10347680713300015372Arabidopsis RhizosphereIDIEVTITDPEYYDGPFTIKRAWKRSSASHPLEYDCIENPRQEDFENAYYVRDRYQPTCMRVKGEGLQLSRIVCRRPEER*
Ga0132255_10012406863300015374Arabidopsis RhizosphereFTPSADGGSIVIETTIEDPEYYTKPFPVQRSWKKSPARHPFEYDCMENPRQEDFENAYYVNERYRPICMRVEGEGRAPSKMVCRRPQ*
Ga0163161_1017481213300017792Switchgrass RhizosphereRSWKKSPARHPFEYDCMENPRQEDFENAYYVNERYRPICMRVEGEGRAPSKMVCRRSQ
Ga0184625_1015340613300018081Groundwater SedimentTQPFSIQRSWKKSPARHPFEYDCMENPRQEDFENAYYVRERYRPVCMRVEGEGMALSRMVCRRP
Ga0190270_1158061923300018469SoilGSIDIATTIDDPEYYSQPFTIQRSWKKSPARHPFEYDCMENPRQEDFENAYYVRERYRPVCMRVEGEGMALSKMVCRRPE
Ga0173479_1004069813300019362SoilMEVAITDPEYYERPFTIKRSWKRSDARHPFEFDCMENPRQEDFENAYYVRDRYRPTCMRVEGEGLEPSKVVCKR
Ga0173479_1029618523300019362SoilYERAFTIKRAWNKSSATHPFEYDCMENPRQEDFENAYYVRDRYQATCMRVKGEGLQLSRMVCRRPEE
Ga0210380_1054386723300021082Groundwater SedimentQRSWKKSPARHPFEYDCMENPRQEDFENAYYLRERYRPICMRVEGVGMAPSKMACRRPQ
Ga0247753_105113413300022892SoilETTITDPEYYKQPFVIKRSWKKSAARHPFEYDCMENPRQEDFENAYYVRERYRPICMRVEGEGMAPSKMVCRLPDKK
Ga0247795_107560713300022899SoilDPEYYERAFTIKRAWNKSSATHPFEYDCMENPRQEDFENAYYVRDRYRPTCMRVKGEGLQLSRMVCRRPEE
Ga0247751_107160723300023069SoilNKSSATHPFEYDCMENPRQEDFENAYYVRDRYQATCMRVKGEGLQLSRMVCRRPEE
Ga0247752_107278613300023071SoilTPSADRGSIDIATTIDDPEYYSQPFTIQRSWKKSPARHPFEYDCMENPRQEDFENAYYVRERYRPVCMRVEGEGMAPSKMVCRL
Ga0247744_101929923300023073SoilEYYKQPFVIKRSWKRSAARHPFEYDCMENPRQEDFENAYYVRERYRPICMRVEGEGMAPSKMVCRLPDKK
Ga0247789_110662613300023266SoilRLTPSADGIEIEVTIEDPEYYERPFTIKRAWNKSSATHPFEYDCMENPRQEDFENAYYVRDRYQATCMRVKGEGLQLSRMVCRRPEE
Ga0207650_1122397123300025925Switchgrass RhizosphereEYYTHPFVINRSWKKSAARHPFEYDCMENPRQEDFENAYYVRERYRPICMRVEGEGVALSKMVCAVRNRALQ
Ga0207644_1103511613300025931Switchgrass RhizosphereERMTRSADGSSLDMEVTITDPEYYERPFTIKRSWKRSDARHPFEFDCMENPRQEDFENAYYVRDRYRPTCMRVEGEGLEPSKVVCKR
Ga0207691_1005855863300025940Miscanthus RhizosphereIQRSWKKSPARHPFEYDCMENPRQEDFENAYYVNERYRPICMRVEGEGRAPSKMVCRRSQ
Ga0207691_1070466923300025940Miscanthus RhizosphereTVERFTPSADGGSIDIATTIDDPEYYSQPFTIQRSWKKSPARHPFEYDCMENPRQEDFENAYYVRERYRPVCMRVEGEGMAPSKMVCRRPE
Ga0207711_1120003213300025941Switchgrass RhizosphereYYAQPFTIQRSWKKSPARHPFEYDCMENPRQEDFENAYYVRERYRPLCMRVEGEGMAPSKMVCRRPQ
Ga0207677_1051406913300026023Miscanthus RhizospherePEYYAQPFTIQRSWKKSPARHPFEYDCMENPRQEDFENAYYVRERYRPLCMRVEGEGRAPSKMVCRRPQ
Ga0207677_1061857113300026023Miscanthus RhizosphereWKKSAARHPFEYDCMENPRQEDFENAYYVRERYRPICMRVEGEGVALSKMVCAVRNRALQ
Ga0207708_1089213823300026075Corn, Switchgrass And Miscanthus RhizosphereRGQPTSSALHTVERLTPSADGIEIEVTIEDPEYYERAFTIKRAWNKSSATHPLEYDCTENPRQEDFENAYYVRDRYQATCMRVKGEGLQLSRMVCRRPEE
Ga0207698_1243060623300026142Corn RhizosphereKSPARHPFEYDCMENPRQEDFENAYYVRERYRPICMRVEGEGMAPSKMVCRRPQ
Ga0256808_107076923300026476SedimentDPEYYTRPFPIKRSWKKSPARHPFEYDCMENPRQEDFENAYYIREEYRPVCMRVEGEGMEPSKMVCRREP
Ga0209996_106602923300027395Arabidopsis Thaliana RhizosphereMPWPIGRLPIEDPEYYERPFTIKRAWNKSSATHPFEYDCMENPRQEDFENAYYVRDRYQATCMRVKGEGLQLSRMVCRRPEE
Ga0310888_1005825313300031538SoilYAQPFTIQRSWKKSPARHPFEYDCMENPRQEDFENAYYVRERYRPLCMRVEGEGMAPSKMVCRRPQ
Ga0310888_1043821613300031538SoilTIKRAWNKSSATHPFEYDCMENPRQEDFENAYYVRDRYRPTCMRVKGEGLQLSRMVCRRPEE
Ga0307408_10215897323300031548RhizosphereYYDGPFTIKRAWNKSSAAHPLEYDCMENPRQEDFENAYYVRDRYEPTCMRVKGEGAELSRVVCRRPEE
Ga0310904_1060969823300031854SoilAWNKSSATHPFEYDCMENPRQEDFENAYYVRDRYQATCMRVKGEGLQLSRMVCRRPEE
Ga0310904_1134706413300031854SoilIEVTITDPEYYSEPVRIKRGWKKSTSRHLLEYDCMENPRQEDFENAYYVREQYRPVCYRVEGKGMELSRMVCPRPEEGASP
Ga0307406_1079472723300031901RhizosphereTTIDDPEYYSQPFTIQRSWKKSPARHPFEYDCMENPRQEDFENAYYVRERYRPVCMRVEGEGMALSKMVCRRPE
Ga0307407_1011106513300031903RhizosphereIKRSWKKSASRHPYEYDCMENPRQEDFENAYYVRERYLPVCMRIEGEGMALSRVVCGRPK
Ga0311367_1195747723300031918FenSPARHPFEYDCMENPRQEDFENAYYVRERYRPVCMRVEGEGMAPSKMVCKREE
Ga0308175_10283706823300031938SoilPFTIKRSWKKSPARHPFEYDCMENPRQEDFENAYYVRERYRPVCMRVEGAGMELSRMVCRREP
Ga0310901_1024819213300031940SoilTKPFTIQRSWKKSPARHPFEYDCMENPRQEDFENAYYVNERYRPICMRVEGVGRAPSKMVCRRPE
Ga0307409_10140957913300031995RhizosphereTIEDPEYYTEPFTIMRSWKKSPAAHPFEYDCMENPRQEDFENAYYVRERYAPVCMRVEGEGMAPSKMVCRAPK
Ga0308176_1092830813300031996SoilQSPARHPFEYDCMENPRQEDFENAYYVRERYRPVCMRVEGEGMALSKMVCRPKG
Ga0310902_1095935213300032012SoilWKKSPARHPFEYDCMENPRQEDFENAYYVRERYRPLCMRVEGEGRAPSKMVCRRPQ
Ga0307415_10077108013300032126RhizosphereSADGGSIDIATTIDDPEYYSQPFTIQRSWKKSPARHPFEYDCMENPRQEDFENAYYVRERYRPVCMRVEGEGMAPSTMVCRRPE
Ga0335079_1187192123300032783SoilLHTVERFTPSADGASIDIETTVEDPEYYTHPFVIKRSWKASAARHPFEFDCMENPRQEDFENAYYIREQYRPVCMRVEGEGMAPSKMVCGRKP


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