3300005060: Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 15 soap2

Overview

Basic Information

• IMG/M Taxon OID: 3300005060
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114530 | Gp0149118 | Ga0070920
• Sample Name: Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 15 soap2
• Sequencing Status: Permanent Draft
• Sequencing Center: Center for Advanced Technologies in Genomics, Sao Paulo University
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 177772752
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Compost Microbial Communities From Sao Paulo Zoo, Brazil
• Type: Engineered
• Taxonomy: Engineered → Solid Waste → Zoo Waste → Composting → Unclassified → Compost → Compost Microbial Communities From Sao Paulo Zoo, Brazil

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Sao Paulo Zoo, Brazil
• Coordinates
  • Lat. (^o): -23.651072
  • Long. (^o): -46.620675
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006324	Metagenome	376	Y
F023181	Metagenome / Metatranscriptome	211	Y
F042079	Metagenome	159	Y
F102140	Metagenome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0070920_1323968	Not Available	543
Ga0070920_1359870	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	708
Ga0070920_1389138	All Organisms → cellular organisms → Bacteria	1557

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0070920_1323968	Ga0070920_13239682	F006324	EAFFACLSGNCCDACFPLGADFDADGDTGTDADIEAFFRVLVGGAC*
Ga0070920_1354619	Ga0070920_13546192	F102140	TSPALHTVERFRLSEDGNRIEIEVTITDPEYYQEPFTIKRAWRRSEARHPFEYDCMENPREEDFENAYYVRDRYRPTCMRVEGEGMEPSRVVCRRRDEE*
Ga0070920_1359870	Ga0070920_13598701	F023181	PEADIEFYDRARRELEAKGFSFIADVEDLTLSRIYPNNRTFLRLFIDAGRMVRASVYHLHPRGVVISLLQLVQLFPRHLRVVELVSEVNGRFLVTSNTHGVDRLEPPPEAKVERLPLGTPLLDVVARHEQRITELLREHPEHSPVTFESLDDVLASIARAHVAMARHRQRVGGLSRDELERLKGRPLSATEEAFLREVQGKGEPS*
Ga0070920_1389138	Ga0070920_13891383	F042079	VRVDVFNAPNSAIITGRQTTMQLSSPNAPTTPTNSPFDANGELIPARSRPNGAGFGVASGYQAPRTVQLQLRFSF*