3300002210: Compost microbial communities from Sao Paulo Zoo, Brazil - ZC3b day 78

Overview

Basic Information

• IMG/M Taxon OID: 3300002210
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0047180 | Gp0072817 | Ga0022192
• Sample Name: Compost microbial communities from Sao Paulo Zoo, Brazil - ZC3b day 78
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Sao Paulo, Virginia Bioinformatics Institute
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 149611086
• Sequencing Scaffolds: 4
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Compost Microbial Communities From Sao Paulo Zoo, Brazil
• Type: Engineered
• Taxonomy: Engineered → Solid Waste → Zoo Waste → Composting → Unclassified → Compost → Compost Microbial Communities From Sao Paulo Zoo, Brazil

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Sao Paulo Zoo, Brazil
• Coordinates
  • Lat. (^o): -23.651072
  • Long. (^o): -46.620675
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015419	Metagenome / Metatranscriptome	255	Y
F026032	Metagenome / Metatranscriptome	199	Y
F036417	Metagenome / Metatranscriptome	170	Y
F059782	Metagenome	133	Y
F102140	Metagenome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
metazooDRAFT_1307969	All Organisms → cellular organisms → Bacteria → Acidobacteria	562
metazooDRAFT_1316507	Not Available	603
metazooDRAFT_1320622	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	628
metazooDRAFT_1338591	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	851

Sequences

Scaffold ID	Protein ID	Family	Sequence
metazooDRAFT_1307969	metazooDRAFT_13079691	F026032	PVTRGGKCGNVTRPPDGPGAHPPARTMSQPVPSRVSVAFAMFCEGYDPAFPTDLRRMTTGIGGWQADDPPTIELTLAVGLWSLEAGRIACRFGIRRPGDDVVYFGEGDTTVDEPGEMAIMPLRLTVTLDRPGVYWAICEFDGRPLVQVPFSVSEAPPPAAGGQPAPLP*
metazooDRAFT_1316507	metazooDRAFT_13165071	F059782	MRVEFQVARGRMIRGKGSQVAAFSVLLDIDSEHLDVLERADIAQRLITRFAQAIAEEFG
metazooDRAFT_1320622	metazooDRAFT_13206223	F015419	MEYKVQITDEAGNIHQYNVSRSSSSEDKSLNDFILEALQISEDKRKLPVKIQCPNGLEVYPSIKMKFENYGSPLLGDKLEAMHI
metazooDRAFT_1338591	metazooDRAFT_13385912	F036417	VLVRLATDDGEIVFRARWKRSALELQRNILFRMRRGSPLWFEDEWGHAICFKPETVWGAVVDGR*
metazooDRAFT_1340578	metazooDRAFT_13405781	F102140	IPIDDPEYYTEPFTIHRSWRRAEARHQHEYDCMENPRQEDFANAYYVHDRYRPTCMRVQGEGMEPSRMVCRREEQ*